Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DL800_RS19445 Genome accession   NZ_CP029692
Coordinates   3280815..3281552 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SD134209     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3275815..3286552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL800_RS19430 (DL800_19430) clpC 3276269..3278842 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  DL800_RS19435 (DL800_19435) yfiH 3278972..3279703 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  DL800_RS19440 (DL800_19440) rluD 3279700..3280680 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DL800_RS19445 (DL800_19445) comL 3280815..3281552 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DL800_RS19455 (DL800_19455) raiA 3281823..3282164 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DL800_RS19460 (DL800_19460) pheL 3282268..3282315 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DL800_RS19465 (DL800_19465) pheA 3282414..3283574 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  DL800_RS19470 (DL800_19470) tyrA 3283617..3284738 (-) 1122 WP_000225214.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DL800_RS19475 (DL800_19475) aroF 3284749..3285819 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DL800_RS19480 (DL800_19480) yfiL 3286029..3286394 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=256995 DL800_RS19445 WP_000197686.1 3280815..3281552(+) (comL) [Escherichia coli strain SD134209]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=256995 DL800_RS19445 WP_000197686.1 3280815..3281552(+) (comL) [Escherichia coli strain SD134209]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment