Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CVO91_RS10640 Genome accession   NZ_CP024974
Coordinates   2087773..2088267 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain CZ130302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2082773..2093267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS10625 (CVO91_10625) - 2085569..2086513 (+) 945 WP_024397681.1 magnesium transporter CorA family protein -
  CVO91_RS10630 (CVO91_10630) - 2086529..2087185 (+) 657 WP_002942410.1 DUF1129 domain-containing protein -
  CVO91_RS10635 (CVO91_10635) rpsR 2087501..2087740 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  CVO91_RS10640 (CVO91_10640) ssbA 2087773..2088267 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  CVO91_RS10645 (CVO91_10645) rpsF 2088279..2088569 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  CVO91_RS10650 (CVO91_10650) - 2088741..2089730 (-) 990 WP_002942402.1 lipoate--protein ligase -
  CVO91_RS10655 (CVO91_10655) lpdA 2089831..2091591 (-) 1761 WP_002942398.1 dihydrolipoyl dehydrogenase -
  CVO91_RS10660 (CVO91_10660) - 2091861..2093249 (-) 1389 WP_002942394.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=256942 CVO91_RS10640 WP_002942409.1 2087773..2088267(-) (ssbA) [Streptococcus suis strain CZ130302]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=256942 CVO91_RS10640 WP_002942409.1 2087773..2088267(-) (ssbA) [Streptococcus suis strain CZ130302]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCGCCTTATCAAG
CACCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment