Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   C7M54_RS09530 Genome accession   NZ_CP029685
Coordinates   1841811..1843073 (-) Length   420 a.a.
NCBI ID   WP_000472299.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CMRSA-3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836811..1848073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M54_RS09505 (C7M54_09505) - 1837009..1837677 (-) 669 WP_000805950.1 uroporphyrinogen-III synthase -
  C7M54_RS09510 (C7M54_09510) hemC 1837699..1838625 (-) 927 WP_001230228.1 hydroxymethylbilane synthase -
  C7M54_RS09515 (C7M54_09515) - 1838667..1839482 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  C7M54_RS09520 (C7M54_09520) hemA 1839504..1840850 (-) 1347 WP_000545451.1 glutamyl-tRNA reductase -
  C7M54_RS09525 (C7M54_09525) yihA 1841067..1841657 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  C7M54_RS09530 (C7M54_09530) clpX 1841811..1843073 (-) 1263 WP_000472299.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  C7M54_RS09535 (C7M54_09535) tig 1843224..1844525 (-) 1302 WP_000127573.1 trigger factor -
  C7M54_RS09540 (C7M54_09540) - 1844573..1844683 (-) 111 WP_001790560.1 hypothetical protein -
  C7M54_RS09545 (C7M54_09545) - 1844688..1845617 (-) 930 WP_001280018.1 hypothetical protein -
  C7M54_RS09550 (C7M54_09550) - 1845636..1846244 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  C7M54_RS09560 (C7M54_09560) rplT 1846386..1846742 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  C7M54_RS09565 (C7M54_09565) rpmI 1846789..1846989 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  C7M54_RS09570 (C7M54_09570) infC 1847018..1847545 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46329.54 Da        Isoelectric Point: 4.2645

>NTDB_id=256932 C7M54_RS09530 WP_000472299.1 1841811..1843073(-) (clpX) [Staphylococcus aureus strain CMRSA-3]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALMKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=256932 C7M54_RS09530 WP_000472299.1 1841811..1843073(-) (clpX) [Staphylococcus aureus strain CMRSA-3]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACCTTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTATGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.667

95

0.633
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531

Multiple sequence alignment