Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MGAS9429_RS08955 Genome accession   NC_008021
Coordinates   1820942..1822048 (+) Length   368 a.a.
NCBI ID   WP_011527822.1    Uniprot ID   Q1JJC0
Organism   Streptococcus pyogenes MGAS9429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1815942..1827048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS9429_RS08935 (MGAS9429_Spy1862) hasA 1816620..1817879 (+) 1260 WP_029714250.1 hyaluronan synthase HasA -
  MGAS9429_RS08940 (MGAS9429_Spy1863) hasB 1817915..1819123 (+) 1209 WP_011527820.1 UDP-glucose 6-dehydrogenase HasB -
  MGAS9429_RS08945 (MGAS9429_Spy1864) hasC 1819305..1820219 (+) 915 WP_010922799.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  MGAS9429_RS08950 (MGAS9429_Spy1865) yaaA 1820527..1820940 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  MGAS9429_RS08955 (MGAS9429_Spy1866) recF 1820942..1822048 (+) 1107 WP_011527822.1 DNA replication/repair protein RecF Machinery gene
  MGAS9429_RS08960 (MGAS9429_Spy1867) - 1822103..1822966 (-) 864 WP_002992310.1 GRP family sugar transporter -
  MGAS9429_RS08965 (MGAS9429_Spy1868) guaB 1823169..1824650 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  MGAS9429_RS08970 (MGAS9429_Spy1869) trpS 1824958..1825980 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41865.80 Da        Isoelectric Point: 7.8080

>NTDB_id=25684 MGAS9429_RS08955 WP_011527822.1 1820942..1822048(+) (recF) [Streptococcus pyogenes MGAS9429]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLY
QLEKNHQKDFFRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=25684 MGAS9429_RS08955 WP_011527822.1 1820942..1822048(+) (recF) [Streptococcus pyogenes MGAS9429]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTATAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGAATTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JJC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462

Multiple sequence alignment