Detailed information NTG0256666

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CV724_RS07415
• Genome accession: NZ_CP024952
• Coordinates: 1526252..1527250 (-)
• Length: 332 a.a.
• NCBI ID: WP_145727432.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B125A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1521252..1532250

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV724_RS08345	-	1521380..1521496 (+)	117	WP_227998536.1	anthranilate synthase component I	-
CV724_RS07395 (CV724_07420)	-	1521547..1522479 (-)	933	WP_145727428.1	GDP-L-fucose synthase	-
CV724_RS07400 (CV724_07425)	gmd	1522472..1523617 (-)	1146	WP_145727429.1	GDP-mannose 4,6-dehydratase	-
CV724_RS07405 (CV724_07430)	-	1523646..1525058 (-)	1413	WP_145727430.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV724_RS07410 (CV724_07435)	comB10	1525129..1526259 (-)	1131	WP_145727431.1	DNA type IV secretion system protein ComB10	Machinery gene
CV724_RS07415 (CV724_07440)	comB9	1526252..1527250 (-)	999	WP_145727432.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV724_RS07420 (CV724_07445)	comB8	1527250..1527987 (-)	738	WP_000660517.1	virB8 family protein	Machinery gene
CV724_RS07425 (CV724_07450)	comB7	1527984..1528097 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV724_RS07430 (CV724_07455)	comB6	1528113..1529168 (-)	1056	WP_145727433.1	P-type conjugative transfer protein TrbL	Machinery gene
CV724_RS07435 (CV724_07460)	-	1529176..1530180 (-)	1005	WP_145727518.1	PDZ domain-containing protein	-
CV724_RS08350	-	1530180..1530473 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
CV724_RS08355	panD	1530483..1530833 (-)	351	WP_108310021.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38023.75 Da
• Isoelectric Point: 9.1919

>NTDB_id=256666 CV724_RS07415 WP_145727432.1 1526252..1527250(-) (comB9) [Helicobacter pylori strain B125A]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENALENAPTNDNKPLKEEPLKVGKEEAKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRK
WYCLGICSKKSKPSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDY
LCIRFVKKGKDE

Nucleotide

• Length: 999 bp

>NTDB_id=256666 CV724_RS07415 WP_145727432.1 1526252..1527250(-) (comB9) [Helicobacter pylori strain B125A]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCTAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGAGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTATTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAACCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCTTGAAAATGCCCCCACAAACGA
CAACAAGCCCTTAAAAGAAGAACCCTTAAAAGTAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAAACGATAACCATTG
GCGATAACACCAATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAA
TGGTATTGTTTGGGGATTTGTTCTAAAAAATCCAAACCCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCAC
TTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGG
TGAATACAAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTAT
TTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-323)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.181	100	0.952