Detailed information NTG0256669

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: CV724_RS07430
• Genome accession: NZ_CP024952
• Coordinates: 1528113..1529168 (-)
• Length: 351 a.a.
• NCBI ID: WP_145727433.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B125A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1523113..1534168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV724_RS07405 (CV724_07430)	-	1523646..1525058 (-)	1413	WP_145727430.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV724_RS07410 (CV724_07435)	comB10	1525129..1526259 (-)	1131	WP_145727431.1	DNA type IV secretion system protein ComB10	Machinery gene
CV724_RS07415 (CV724_07440)	comB9	1526252..1527250 (-)	999	WP_145727432.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV724_RS07420 (CV724_07445)	comB8	1527250..1527987 (-)	738	WP_000660517.1	virB8 family protein	Machinery gene
CV724_RS07425 (CV724_07450)	comB7	1527984..1528097 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV724_RS07430 (CV724_07455)	comB6	1528113..1529168 (-)	1056	WP_145727433.1	P-type conjugative transfer protein TrbL	Machinery gene
CV724_RS07435 (CV724_07460)	-	1529176..1530180 (-)	1005	WP_145727518.1	PDZ domain-containing protein	-
CV724_RS08350	-	1530180..1530473 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
CV724_RS08355	panD	1530483..1530833 (-)	351	WP_108310021.1	aspartate 1-decarboxylase	-
CV724_RS07445 (CV724_07470)	-	1530823..1533048 (-)	2226	WP_145727434.1	ATP-dependent Clp protease ATP-binding subunit	-
CV724_RS07450 (CV724_07475)	-	1533048..1533323 (-)	276	WP_108288324.1	ATP-dependent Clp protease adaptor ClpS	-
CV724_RS07455 (CV724_07480)	-	1533338..1533751 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39985.07 Da
• Isoelectric Point: 8.8155

>NTDB_id=256669 CV724_RS07430 WP_145727433.1 1528113..1529168(-) (comB6) [Helicobacter pylori strain B125A]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLLEALWFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIVQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVITCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=256669 CV724_RS07430 WP_145727433.1 1528113..1529168(-) (comB6) [Helicobacter pylori strain B125A]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCCATGCGCTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGTGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTAAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCAATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACTTGGAGGAGCGTTGTAATTACATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGTGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969