Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CV726_RS00955 | Genome accession | NZ_CP024950 |
| Coordinates | 201581..202711 (+) | Length | 376 a.a. |
| NCBI ID | WP_001045759.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B130A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 196581..207711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV726_RS00920 (CV726_00925) | panD | 197023..197376 (+) | 354 | WP_000142239.1 | aspartate 1-decarboxylase | - |
| CV726_RS00925 (CV726_00930) | - | 197379..197672 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CV726_RS00930 (CV726_00935) | - | 197672..198667 (+) | 996 | WP_145940748.1 | PDZ domain-containing protein | - |
| CV726_RS00935 (CV726_00940) | comB6 | 198675..199730 (+) | 1056 | WP_145939924.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CV726_RS00940 (CV726_00945) | comB7 | 199746..199859 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| CV726_RS00945 (CV726_00950) | comB8 | 199856..200599 (+) | 744 | WP_145939925.1 | virB8 family protein | Machinery gene |
| CV726_RS00950 (CV726_00955) | comB9 | 200599..201588 (+) | 990 | WP_145939926.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CV726_RS00955 (CV726_00960) | comB10 | 201581..202711 (+) | 1131 | WP_001045759.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CV726_RS00960 (CV726_00965) | - | 202781..204193 (+) | 1413 | WP_145939927.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CV726_RS00965 (CV726_00970) | gmd | 204223..205368 (+) | 1146 | WP_145939928.1 | GDP-mannose 4,6-dehydratase | - |
| CV726_RS00970 (CV726_00975) | - | 205361..206293 (+) | 933 | WP_145939929.1 | GDP-L-fucose synthase | - |
| CV726_RS00975 (CV726_00980) | - | 206643..206969 (-) | 327 | WP_145939930.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 42005.56 Da Isoelectric Point: 9.7473
>NTDB_id=256621 CV726_RS00955 WP_001045759.1 201581..202711(+) (comB10) [Helicobacter pylori strain B130A]
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGAVVFVGGFATIMTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=256621 CV726_RS00955 WP_001045759.1 201581..202711(+) (comB10) [Helicobacter pylori strain B130A]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTATTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATGACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTATTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.543 |
100 |
0.965 |