Detailed information NTG0256620

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CV726_RS00950
• Genome accession: NZ_CP024950
• Coordinates: 200599..201588 (+)
• Length: 329 a.a.
• NCBI ID: WP_145939926.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain B130A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 195599..206588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV726_RS00920 (CV726_00925)	panD	197023..197376 (+)	354	WP_000142239.1	aspartate 1-decarboxylase	-
CV726_RS00925 (CV726_00930)	-	197379..197672 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
CV726_RS00930 (CV726_00935)	-	197672..198667 (+)	996	WP_145940748.1	PDZ domain-containing protein	-
CV726_RS00935 (CV726_00940)	comB6	198675..199730 (+)	1056	WP_145939924.1	P-type conjugative transfer protein TrbL	Machinery gene
CV726_RS00940 (CV726_00945)	comB7	199746..199859 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV726_RS00945 (CV726_00950)	comB8	199856..200599 (+)	744	WP_145939925.1	virB8 family protein	Machinery gene
CV726_RS00950 (CV726_00955)	comB9	200599..201588 (+)	990	WP_145939926.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV726_RS00955 (CV726_00960)	comB10	201581..202711 (+)	1131	WP_001045759.1	DNA type IV secretion system protein ComB10	Machinery gene
CV726_RS00960 (CV726_00965)	-	202781..204193 (+)	1413	WP_145939927.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV726_RS00965 (CV726_00970)	gmd	204223..205368 (+)	1146	WP_145939928.1	GDP-mannose 4,6-dehydratase	-
CV726_RS00970 (CV726_00975)	-	205361..206293 (+)	933	WP_145939929.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 38026.81 Da
• Isoelectric Point: 9.5487

>NTDB_id=256620 CV726_RS00950 WP_145939926.1 200599..201588(+) (comB9) [Helicobacter pylori strain B130A]
MRKVLYALMGFLLAFSALKADDFLEEANETTPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDHILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAPKNNHKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYC
LWACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCI
RFVKRSKGE

Nucleotide

• Length: 990 bp

>NTDB_id=256620 CV726_RS00950 WP_145939926.1 200599..201588(+) (comB9) [Helicobacter pylori strain B130A]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAACTCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
CAACGATCACATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCAAA
AAATAACCACAAACCCTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACA
CCAACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGT
TTATGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAA
ATTTGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAA
GGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGATTATCTGTGTATC
CGTTTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.401	100	0.924