Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CV730_RS02460 Genome accession   NZ_CP024946
Coordinates   501978..502778 (+) Length   266 a.a.
NCBI ID   WP_145728314.1    Uniprot ID   -
Organism   Helicobacter pylori strain B147     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 496978..507778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV730_RS02425 (CV730_02420) pseH 497478..498020 (+) 543 WP_145728310.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  CV730_RS02430 (CV730_02425) - 497953..498891 (-) 939 WP_145728311.1 tetraacyldisaccharide 4'-kinase -
  CV730_RS02435 (CV730_02430) - 498888..499670 (-) 783 WP_145728312.1 NAD+ synthase -
  CV730_RS02445 (CV730_02440) ilvC 499919..500911 (+) 993 WP_145728313.1 ketol-acid reductoisomerase -
  CV730_RS02450 (CV730_02445) minD 500935..501741 (+) 807 WP_003014933.1 septum site-determining protein MinD -
  CV730_RS02455 (CV730_02450) minE 501738..501971 (+) 234 WP_000051430.1 cell division topological specificity factor MinE -
  CV730_RS02460 (CV730_02455) dprA 501978..502778 (+) 801 WP_145728314.1 DNA-processing protein DprA Machinery gene
  CV730_RS02465 (CV730_02460) dprB 502775..503179 (+) 405 WP_145728315.1 Holliday junction resolvase RuvX Machinery gene
  CV730_RS02470 (CV730_02465) - 503457..504317 (+) 861 WP_145729166.1 tetratricopeptide repeat protein -
  CV730_RS02475 (CV730_02470) - 504446..504784 (+) 339 WP_145728316.1 hypothetical protein -
  CV730_RS02480 (CV730_02475) - 504768..505328 (+) 561 WP_145728317.1 hypothetical protein -
  CV730_RS02485 (CV730_02480) - 505411..506307 (-) 897 WP_145728318.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29813.71 Da        Isoelectric Point: 8.2264

>NTDB_id=256540 CV730_RS02460 WP_145728314.1 501978..502778(+) (dprA) [Helicobacter pylori strain B147]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLQSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=256540 CV730_RS02460 WP_145728314.1 501978..502778(+) (dprA) [Helicobacter pylori strain B147]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACCCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTACAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTAAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATAAAAGACGAATTTTTGGAATATTGCGCCAAAAACCCGAGCTACGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.992

100

0.97
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.23

84.962

0.41

Multiple sequence alignment