Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CSC33_RS27870 Genome accession   NZ_CP029660
Coordinates   5839288..5839932 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5834288..5844932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS27840 (CSC33_5638) - 5835147..5835776 (+) 630 WP_073649947.1 glycoside hydrolase family 19 protein -
  CSC33_RS27845 (CSC33_5639) - 5835773..5836135 (+) 363 WP_033972912.1 hypothetical protein -
  CSC33_RS27850 - 5836132..5836389 (+) 258 WP_073649948.1 hypothetical protein -
  CSC33_RS27855 (CSC33_5641) - 5836737..5837342 (+) 606 WP_033972893.1 aminodeoxychorismate/anthranilate synthase component II -
  CSC33_RS27860 (CSC33_5642) trpD 5837344..5838393 (+) 1050 WP_033972894.1 anthranilate phosphoribosyltransferase -
  CSC33_RS27865 (CSC33_5643) trpC 5838390..5839226 (+) 837 WP_057387862.1 indole-3-glycerol phosphate synthase TrpC -
  CSC33_RS27870 (CSC33_5644) crp 5839288..5839932 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  CSC33_RS27875 (CSC33_5645) - 5840204..5840626 (+) 423 WP_003085219.1 OsmC family protein -
  CSC33_RS27880 (CSC33_5646) speD 5840945..5841739 (+) 795 WP_033977932.1 adenosylmethionine decarboxylase -
  CSC33_RS27885 (CSC33_5647) coq7 5841794..5842441 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  CSC33_RS27890 (CSC33_5648) - 5842541..5842879 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  CSC33_RS27895 (CSC33_5649) - 5842958..5844439 (+) 1482 WP_057387865.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=255977 CSC33_RS27870 WP_003085214.1 5839288..5839932(-) (crp) [Pseudomonas aeruginosa strain AR_0446]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=255977 CSC33_RS27870 WP_003085214.1 5839288..5839932(-) (crp) [Pseudomonas aeruginosa strain AR_0446]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCACAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTGGCCCGCACCTTGCTGGACCTGTGCCAGCAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505

Multiple sequence alignment