Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CTW00_RS01190 Genome accession   NZ_CP024843
Coordinates   244423..244914 (-) Length   163 a.a.
NCBI ID   WP_003102076.1    Uniprot ID   A0A1J0N134
Organism   Streptococcus iniae strain FP5228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 239423..249914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTW00_RS01180 (CTW00_00237) - 241838..243958 (+) 2121 WP_003102074.1 LTA synthase family protein -
  CTW00_RS01185 (CTW00_00238) rpsR 244119..244358 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  CTW00_RS01190 (CTW00_00239) ssbA 244423..244914 (-) 492 WP_003102076.1 single-stranded DNA-binding protein Machinery gene
  CTW00_RS01195 (CTW00_00240) rpsF 244935..245225 (-) 291 WP_003102078.1 30S ribosomal protein S6 -
  CTW00_RS01200 (CTW00_00241) - 245479..246645 (+) 1167 WP_041497833.1 IS30-like element ISSag9 family transposase -
  CTW00_RS01205 (CTW00_00242) mutY 247801..248958 (+) 1158 WP_003102081.1 A/G-specific adenine glycosylase -
  CTW00_RS10345 - 249144..249275 (+) 132 Protein_231 helix-turn-helix transcriptional regulator -
  CTW00_RS01210 (CTW00_00243) - 249351..249743 (+) 393 WP_003102082.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18024.78 Da        Isoelectric Point: 4.9008

>NTDB_id=255796 CTW00_RS01190 WP_003102076.1 244423..244914(-) (ssbA) [Streptococcus iniae strain FP5228]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQSGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYDNQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGFNNSSSNNNYSAPAQQTPNFGREESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=255796 CTW00_RS01190 WP_003102076.1 244423..244914(-) (ssbA) [Streptococcus iniae strain FP5228]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCTGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTTAAAAGCCAAAGTGGTGAGCGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCATTGATTGGAATAACAGGTCGTATTCAAACCCGT
AATTATGACAATCAACAAGGTCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCATCTAATTCTTATAATGGTGGCGGTTTTAACAATTCATCATCAAATAATAATTATTCTGCTC
CAGCACAACAAACGCCTAATTTTGGTCGAGAAGAAAGTCCATTTGGAAACTCTAACCCAATGGATATCTCAGATGACGAT
TTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.25

100

0.607
  ssb Latilactobacillus sakei subsp. sakei 23K

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment