Detailed information NTG0255772

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OA04_RS15355
• Genome accession: NZ_CP024842
• Coordinates: 3372700..3373545 (-)
• Length: 281 a.a.
• NCBI ID: WP_107333189.1
• Uniprot ID: -
• Organism: Pectobacterium versatile strain 3-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3367700..3378545

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OA04_RS15330 (OA04_30950)	-	3367876..3368646 (-)	771	WP_107333187.1	ABC transporter ATP-binding protein	-
OA04_RS15335 (OA04_30960)	-	3368648..3369685 (-)	1038	WP_039492234.1	iron ABC transporter permease	-
OA04_RS15340 (OA04_30970)	-	3369682..3370746 (-)	1065	WP_107333188.1	ABC transporter substrate-binding protein	-
OA04_RS15345 (OA04_30980)	-	3371098..3372123 (+)	1026	WP_103862229.1	LLM class flavin-dependent oxidoreductase	-
OA04_RS15350	ypdK	3372480..3372554 (+)	75	WP_099606229.1	membrane protein YpdK	-
OA04_RS15355 (OA04_30990)	pilD	3372700..3373545 (-)	846	WP_107333189.1	A24 family peptidase	Machinery gene
OA04_RS15360 (OA04_31000)	-	3373635..3374381 (-)	747	WP_107333190.1	type II secretion system protein N	-
OA04_RS15365 (OA04_31010)	gspM	3374371..3374865 (-)	495	WP_103862232.1	type II secretion system protein GspM	-
OA04_RS15370 (OA04_31020)	gspL	3374862..3376139 (-)	1278	WP_107333191.1	type II secretion system protein GspL	-
OA04_RS15375 (OA04_31030)	gspK	3376136..3377122 (-)	987	WP_010302966.1	type II secretion system minor pseudopilin GspK	-
OA04_RS15380 (OA04_31040)	gspJ	3377119..3377769 (-)	651	WP_103940956.1	type II secretion system minor pseudopilin GspJ	-
OA04_RS15385 (OA04_31050)	gspI	3377769..3378134 (-)	366	WP_107333192.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31322.16 Da
• Isoelectric Point: 7.0813

>NTDB_id=255772 OA04_RS15355 WP_107333189.1 3372700..3373545(-) (pilD) [Pectobacterium versatile strain 3-2]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSAQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=255772 OA04_RS15355 WP_107333189.1 3372700..3373545(-) (pilD) [Pectobacterium versatile strain 3-2]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGATCGCTGGGCGTGTTGGGATTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCGTGGCCGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAACAGGCTATT
GCGGTCAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAATCGGTCTCTGC
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCCTGTTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTTTCATTGAACGATGCCGTAGTCGGCGC
GATGGCTGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCCACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCAGCGTTGAGC
GGTCTGGTCGTTACTCTCGTCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGTTAGCTTTTGGCCCCTGGCTGGC
AATGGGTGGCGTGTTTGGTGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.554	96.441	0.488
pilD	Vibrio campbellii strain DS40M4	45.556	96.085	0.438
pilD	Neisseria gonorrhoeae MS11	46.743	92.883	0.434
pilD	Acinetobacter baumannii D1279779	42.491	97.153	0.413
pilD	Acinetobacter nosocomialis M2	42.125	97.153	0.409