Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CS547_RS12040 Genome accession   NZ_CP024647
Coordinates   2468656..2468991 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lzh-5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463656..2473991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS547_RS12020 (CS547_12010) gcvT 2464262..2465362 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  CS547_RS12025 (CS547_12015) - 2465786..2467456 (+) 1671 WP_038461530.1 DEAD/DEAH box helicase -
  CS547_RS12030 (CS547_12020) - 2467478..2468272 (+) 795 WP_014418368.1 YqhG family protein -
  CS547_RS12035 (CS547_12025) sinI 2468449..2468622 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  CS547_RS12040 (CS547_12030) sinR 2468656..2468991 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CS547_RS12045 (CS547_12035) tasA 2469039..2469824 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  CS547_RS12050 (CS547_12040) sipW 2469889..2470473 (-) 585 WP_022552967.1 signal peptidase I SipW -
  CS547_RS12055 (CS547_12045) tapA 2470445..2471116 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  CS547_RS12060 (CS547_12050) - 2471375..2471704 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CS547_RS12065 (CS547_12055) - 2471745..2471924 (-) 180 WP_022552966.1 YqzE family protein -
  CS547_RS12070 (CS547_12060) comGG 2471981..2472358 (-) 378 WP_022552965.1 competence type IV pilus minor pilin ComGG Machinery gene
  CS547_RS12075 (CS547_12065) comGF 2472359..2472754 (-) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  CS547_RS12080 (CS547_12070) comGE 2472768..2473082 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  CS547_RS12085 (CS547_12075) comGD 2473066..2473503 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  CS547_RS12090 (CS547_12080) comGC 2473493..2473801 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=254741 CS547_RS12040 WP_003153104.1 2468656..2468991(+) (sinR) [Bacillus velezensis strain Lzh-5]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=254741 CS547_RS12040 WP_003153104.1 2468656..2468991(+) (sinR) [Bacillus velezensis strain Lzh-5]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment