Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   MHUN_RS16530 Genome accession   NC_007796
Coordinates   3463682..3464671 (-) Length   329 a.a.
NCBI ID   WP_011450095.1    Uniprot ID   Q2FNH1
Organism   Methanospirillum hungatei JF-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458682..3469671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHUN_RS16520 (Mhun_3166) - 3459975..3461426 (+) 1452 WP_011450093.1 PAS domain-containing response regulator -
  MHUN_RS17965 (Mhun_3167) - 3461617..3463653 (+) 2037 WP_011450094.1 CHASE4 domain-containing protein -
  MHUN_RS16530 (Mhun_3168) epdK 3463682..3464671 (-) 990 WP_011450095.1 type II secretion system F family protein Machinery gene
  MHUN_RS16535 (Mhun_3169) epdJ 3464674..3465609 (-) 936 WP_048067644.1 type II secretion system F family protein Machinery gene
  MHUN_RS16540 (Mhun_3170) epdL 3465596..3467425 (-) 1830 WP_011450097.1 type II/IV secretion system ATPase subunit Machinery gene
  MHUN_RS16545 (Mhun_3171) - 3467602..3468225 (+) 624 WP_011450098.1 RAD55 family ATPase -
  MHUN_RS16550 (Mhun_3172) - 3468227..3468598 (-) 372 WP_011450099.1 hypothetical protein -
  MHUN_RS16555 (Mhun_3173) - 3468603..3469139 (-) 537 WP_011450100.1 aldolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36135.33 Da        Isoelectric Point: 6.6151

>NTDB_id=25470 MHUN_RS16530 WP_011450095.1 3463682..3464671(-) (epdK) [Methanospirillum hungatei JF-1]
MGLFEKKKVEPSTDPKSDEIYKKIDTYHHYSEGALRFVKHPFRTLFEKPINILYVSVPAGLLVFIIGLSMVIQQGGPEAI
LTNSFIDDIAVFTTIIIVGPLAITDLLEGRRISSIEVALPNFFRDLAGMHESGMTLPGAIHLVSQAEYGALTPHIRQLDQ
RISWNFAFIDAIRQLGKEIPIPLVERSVDLVARASDAGGDIVEVLRAAGKDSAEYVVMKTDRKNNMFIYVIIILASFAVF
LFVVMILVSSFLKTMADLGAESGVSGQAGFNLGGFDLALYIRVFSHAGMFQGFFSGLVAGVMGEGRVTAGLKYSVLMLII
AWATFRFMV

Nucleotide


Download         Length: 990 bp        

>NTDB_id=25470 MHUN_RS16530 WP_011450095.1 3463682..3464671(-) (epdK) [Methanospirillum hungatei JF-1]
ATGGGGCTATTTGAGAAGAAGAAAGTAGAACCTTCGACAGATCCGAAGAGTGATGAGATCTATAAAAAGATAGATACCTA
TCACCACTACTCTGAAGGTGCACTCCGGTTTGTCAAGCACCCCTTCAGGACCCTGTTTGAAAAGCCGATTAATATCCTCT
ATGTATCTGTCCCGGCAGGGCTTTTGGTCTTTATCATCGGGCTTTCTATGGTCATTCAGCAAGGCGGTCCTGAGGCGATA
CTTACCAATTCCTTCATTGATGATATTGCAGTCTTTACCACTATCATCATCGTCGGACCGCTCGCGATAACCGACCTTCT
GGAGGGACGACGGATATCCAGTATTGAGGTTGCGCTTCCGAACTTCTTCAGGGACCTTGCCGGGATGCATGAGAGCGGGA
TGACCCTTCCCGGAGCAATTCACCTGGTCTCACAGGCAGAGTACGGTGCTCTGACTCCCCACATCCGTCAGCTTGACCAG
CGGATATCCTGGAACTTTGCATTCATCGATGCCATCCGCCAGCTGGGAAAAGAGATCCCCATCCCTCTTGTGGAGCGGAG
TGTGGATCTTGTTGCGCGGGCCAGTGATGCCGGTGGTGACATCGTTGAGGTTCTTCGTGCGGCCGGAAAGGACTCGGCAG
AGTACGTGGTCATGAAGACTGACCGGAAGAACAACATGTTCATCTATGTTATCATCATCCTTGCCTCTTTTGCCGTGTTC
CTCTTCGTCGTTATGATCCTCGTCTCTTCGTTCTTAAAGACCATGGCAGATCTCGGAGCAGAAAGCGGGGTATCCGGTCA
GGCCGGGTTTAATCTCGGAGGTTTTGATCTCGCCCTCTATATCCGGGTATTCTCCCATGCCGGCATGTTCCAGGGGTTCT
TCTCAGGGCTTGTGGCAGGAGTTATGGGAGAGGGCCGGGTGACTGCCGGTCTGAAATACTCTGTCCTTATGCTTATCATC
GCCTGGGCAACCTTCCGGTTCATGGTATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(122-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FNH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

54.194

94.225

0.511

Multiple sequence alignment