Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MHUN_RS16535 Genome accession   NC_007796
Coordinates   3464674..3465609 (-) Length   311 a.a.
NCBI ID   WP_048067644.1    Uniprot ID   -
Organism   Methanospirillum hungatei JF-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459674..3470609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHUN_RS16520 (Mhun_3166) - 3459975..3461426 (+) 1452 WP_011450093.1 PAS domain-containing response regulator -
  MHUN_RS17965 (Mhun_3167) - 3461617..3463653 (+) 2037 WP_011450094.1 CHASE4 domain-containing protein -
  MHUN_RS16530 (Mhun_3168) epdK 3463682..3464671 (-) 990 WP_011450095.1 type II secretion system F family protein Machinery gene
  MHUN_RS16535 (Mhun_3169) epdJ 3464674..3465609 (-) 936 WP_048067644.1 type II secretion system F family protein Machinery gene
  MHUN_RS16540 (Mhun_3170) epdL 3465596..3467425 (-) 1830 WP_011450097.1 type II/IV secretion system ATPase subunit Machinery gene
  MHUN_RS16545 (Mhun_3171) - 3467602..3468225 (+) 624 WP_011450098.1 RAD55 family ATPase -
  MHUN_RS16550 (Mhun_3172) - 3468227..3468598 (-) 372 WP_011450099.1 hypothetical protein -
  MHUN_RS16555 (Mhun_3173) - 3468603..3469139 (-) 537 WP_011450100.1 aldolase -
  MHUN_RS16560 (Mhun_3174) npdG 3469143..3469793 (-) 651 WP_011450101.1 NADPH-dependent F420 reductase -
  MHUN_RS16565 (Mhun_3175) - 3469795..3470067 (-) 273 WP_011450102.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34430.23 Da        Isoelectric Point: 4.7834

>NTDB_id=25471 MHUN_RS16535 WP_048067644.1 3464674..3465609(-) (epdJ) [Methanospirillum hungatei JF-1]
MNSYERFCFSLLGSRMSGRREKYYELIENLKSARMGITFEAYLATAIFTSVLVGIIGSFLIALLVFLLDVPGLITFRGNI
PTDIAATINEFQGHYLLLGTIIAGIVSFVVLYGITFLIYLVYPSIVAGGRRRDIETTLPYAINYLAAMSTAGITPAEVFR
QLGNSTIYGESSVEARYIILEVDVFGRDLIEALKNVSMSTPSPRMRDFLQGCIGSVAAGSNISDYFRTKAEQYTGENRQT
QKQFLDTLALIAESYVTALVAGTLFMILIQSIMAILSGESTPLFLYIIIYLIIPFGSVMFVVLIDSMTPEW

Nucleotide


Download         Length: 936 bp        

>NTDB_id=25471 MHUN_RS16535 WP_048067644.1 3464674..3465609(-) (epdJ) [Methanospirillum hungatei JF-1]
ATGAATTCATATGAGCGGTTCTGCTTCTCCCTTCTCGGGAGCCGGATGTCAGGGAGGCGTGAGAAGTACTATGAGCTTAT
TGAGAATCTCAAATCTGCACGCATGGGGATCACCTTTGAAGCCTACCTTGCAACCGCTATCTTTACCTCAGTCCTTGTTG
GTATCATCGGTTCATTTCTGATTGCGCTCCTGGTCTTTCTCCTTGATGTCCCCGGACTCATCACCTTTCGCGGTAACATC
CCGACAGACATTGCAGCAACCATCAATGAGTTCCAGGGGCATTATCTTCTGCTTGGAACCATCATCGCCGGAATCGTCTC
GTTCGTAGTCCTGTACGGGATCACGTTTCTCATTTACCTGGTCTACCCCTCCATCGTCGCCGGGGGGAGGCGGCGTGATA
TTGAGACAACCCTCCCCTATGCGATCAATTATCTTGCAGCCATGTCGACGGCAGGTATCACACCGGCAGAGGTCTTCAGG
CAGCTAGGCAACTCTACCATTTATGGCGAGTCCTCGGTTGAGGCCAGATACATCATCCTTGAGGTGGATGTCTTTGGCCG
GGATCTGATTGAAGCACTCAAGAACGTCTCGATGAGCACCCCGAGCCCCCGTATGCGCGACTTTTTGCAGGGGTGTATCG
GAAGTGTTGCGGCGGGGAGTAATATCTCCGACTATTTCAGGACAAAAGCTGAGCAGTATACCGGTGAGAACAGGCAGACA
CAAAAGCAGTTCCTTGACACTCTGGCACTGATTGCAGAGAGTTATGTCACGGCGCTTGTGGCAGGAACGCTCTTTATGAT
CCTTATCCAGTCGATTATGGCGATCCTCTCAGGCGAATCAACTCCCCTGTTTCTGTACATCATCATCTACCTCATCATCC
CCTTCGGGAGTGTTATGTTTGTGGTGCTGATCGATTCAATGACTCCGGAGTGGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(142-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

61.935

99.678

0.617

Multiple sequence alignment