Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MHUN_RS16540 Genome accession   NC_007796
Coordinates   3465596..3467425 (-) Length   609 a.a.
NCBI ID   WP_011450097.1    Uniprot ID   Q2FNG9
Organism   Methanospirillum hungatei JF-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460596..3472425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHUN_RS17965 (Mhun_3167) - 3461617..3463653 (+) 2037 WP_011450094.1 CHASE4 domain-containing protein -
  MHUN_RS16530 (Mhun_3168) epdK 3463682..3464671 (-) 990 WP_011450095.1 type II secretion system F family protein Machinery gene
  MHUN_RS16535 (Mhun_3169) epdJ 3464674..3465609 (-) 936 WP_048067644.1 type II secretion system F family protein Machinery gene
  MHUN_RS16540 (Mhun_3170) epdL 3465596..3467425 (-) 1830 WP_011450097.1 type II/IV secretion system ATPase subunit Machinery gene
  MHUN_RS16545 (Mhun_3171) - 3467602..3468225 (+) 624 WP_011450098.1 RAD55 family ATPase -
  MHUN_RS16550 (Mhun_3172) - 3468227..3468598 (-) 372 WP_011450099.1 hypothetical protein -
  MHUN_RS16555 (Mhun_3173) - 3468603..3469139 (-) 537 WP_011450100.1 aldolase -
  MHUN_RS16560 (Mhun_3174) npdG 3469143..3469793 (-) 651 WP_011450101.1 NADPH-dependent F420 reductase -
  MHUN_RS16565 (Mhun_3175) - 3469795..3470067 (-) 273 WP_011450102.1 thioredoxin family protein -
  MHUN_RS16570 (Mhun_3176) - 3470120..3471574 (-) 1455 WP_011450103.1 preprotein translocase subunit SecD -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68732.69 Da        Isoelectric Point: 6.8335

>NTDB_id=25472 MHUN_RS16540 WP_011450097.1 3465596..3467425(-) (epdL) [Methanospirillum hungatei JF-1]
MKVRVGSLKKEKNGVKGKDTGAGDPAAAKPAPPTKPLKLSALGGKKKEAAEKPSGLRRLGKKDVQVPQVPESVSSEPKKK
SLFSSFSKIAPLAKKREQYDPKVHGMMVNLTFEPPPGTEEIEVYPVNPPFAYIRITYNYITHEYLYEVVEPIYTDAEKKL
LDEIKKGIFERVNVNTRQISRETAAETLESMMNEVLADYAISLDPLTYEKIHYHLKKDFLGDGLVDPVMHDRYIEDISCD
GVGRPLFVYHSRYESIESNLFYTDAAELDSFVTKLAQRAGKHISVADPMLDATMQDGSRIQMTLGSEVTAHGSTFTIRKF
KDEPITPTDLIEWGTFSPLSIAFLWLAVENGKSCIFAGGTASGKTTSLNAISLFIPPLAKIVTLEDTRELKLPHSNWIPS
VTRESFDVSGKGEIDMYELLKAALRQRPEYLIVGEVRGREALTLFQAMSTGHVTYSTMHADSVSSAVHRLENPPISVPRN
MLSALNLVCVQIQARVGGQRIRRNKQIIEVLDIDPRTNELITNEVFRWRQATDEISYSGKSFILEEIMEAHGWDEERIRR
DLLQRQEVLEWMREKKIRDFRDVSKIVVSYFRDAETLMEQIRSGGNEFI

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=25472 MHUN_RS16540 WP_011450097.1 3465596..3467425(-) (epdL) [Methanospirillum hungatei JF-1]
ATGAAAGTCAGGGTGGGGAGTTTAAAAAAAGAGAAAAATGGTGTCAAGGGGAAGGATACGGGAGCTGGAGATCCAGCTGC
GGCAAAACCTGCCCCTCCGACAAAACCCTTGAAATTATCCGCGCTCGGTGGAAAAAAGAAAGAGGCTGCTGAAAAACCGT
CCGGGCTTCGTCGTCTTGGGAAAAAGGATGTACAAGTGCCGCAAGTTCCTGAATCCGTTTCCTCTGAACCGAAAAAGAAG
TCCCTGTTCAGTTCATTTAGTAAGATAGCTCCACTTGCAAAGAAGCGTGAGCAGTATGATCCCAAGGTTCATGGGATGAT
GGTCAACCTCACCTTTGAACCGCCGCCGGGGACCGAGGAGATTGAGGTATATCCGGTCAATCCCCCATTTGCATACATCC
GTATCACCTACAATTATATCACGCACGAATACCTCTACGAGGTTGTTGAGCCCATCTATACCGATGCAGAAAAAAAACTC
CTTGACGAGATTAAAAAAGGGATCTTTGAGCGGGTGAATGTGAACACCCGGCAGATCTCCAGGGAGACTGCGGCAGAGAC
CCTTGAGTCTATGATGAATGAGGTTCTTGCCGATTATGCCATCTCTCTGGATCCCCTGACCTATGAGAAGATCCACTACC
ATCTGAAAAAGGATTTTCTTGGTGACGGTCTTGTCGATCCGGTGATGCATGACCGGTATATCGAAGATATCTCCTGTGAC
GGTGTGGGAAGGCCGCTTTTTGTTTATCACTCCAGATATGAATCTATAGAATCAAACCTTTTTTACACCGATGCTGCTGA
ACTTGATTCATTTGTAACCAAACTGGCCCAGAGGGCAGGAAAGCACATATCAGTTGCAGATCCCATGCTCGATGCCACTA
TGCAGGATGGCTCCCGTATCCAGATGACACTCGGCTCTGAGGTGACTGCTCATGGCTCTACCTTTACCATACGTAAGTTC
AAGGATGAACCCATCACCCCGACCGACCTGATTGAGTGGGGTACATTCTCACCTCTCTCTATTGCATTTCTCTGGCTTGC
GGTCGAGAACGGAAAGTCATGTATCTTTGCCGGGGGGACGGCATCAGGAAAGACCACCTCATTGAACGCAATATCCCTCT
TTATCCCGCCGCTTGCAAAGATCGTCACCCTAGAAGATACTCGTGAACTGAAACTGCCTCATTCCAACTGGATCCCGAGT
GTCACTCGTGAGTCCTTTGATGTGAGTGGGAAAGGGGAGATTGATATGTATGAGCTCCTGAAGGCTGCGCTTCGTCAGCG
TCCGGAGTATCTGATTGTGGGTGAGGTCCGTGGCCGTGAAGCGCTCACCCTCTTTCAGGCGATGTCAACCGGCCACGTCA
CTTACTCGACCATGCACGCGGATTCGGTATCCTCAGCAGTCCATCGTCTTGAAAACCCGCCCATCTCTGTGCCCAGGAAC
ATGCTTTCAGCGCTGAACCTGGTGTGTGTTCAGATACAGGCACGGGTAGGTGGTCAGCGCATCAGGAGGAACAAACAGAT
CATCGAGGTTCTTGACATCGATCCCAGGACAAATGAACTGATCACGAATGAGGTGTTCAGGTGGCGGCAGGCAACCGATG
AGATCTCCTACTCAGGAAAGTCATTCATTCTTGAAGAGATTATGGAGGCACACGGGTGGGATGAGGAACGGATCAGGCGT
GACCTGCTCCAGCGACAGGAGGTCCTTGAATGGATGCGTGAGAAGAAGATCCGTGACTTCCGTGATGTGAGCAAGATTGT
CGTCTCGTACTTCAGGGATGCCGAAACCCTGATGGAGCAGATACGGTCTGGTGGCAATGAATTCATATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(231-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FNG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

72.316

87.192

0.631

Multiple sequence alignment