Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DLJ64_RS15730 Genome accession   NZ_CP029579
Coordinates   3069975..3070607 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain DA33137     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064975..3075607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ64_RS15705 (DLJ64_15705) yhfG 3065107..3065274 (+) 168 WP_000736860.1 YhfG family protein -
  DLJ64_RS15710 (DLJ64_15710) fic 3065264..3065866 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  DLJ64_RS15715 (DLJ64_15715) pabA 3065898..3066461 (+) 564 WP_001521451.1 aminodeoxychorismate synthase component 2 -
  DLJ64_RS15720 (DLJ64_15720) argD 3066547..3067767 (+) 1221 WP_000963771.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  DLJ64_RS15725 (DLJ64_15725) yhfK 3067834..3069924 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  DLJ64_RS15730 (DLJ64_15730) crp 3069975..3070607 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  DLJ64_RS15740 (DLJ64_15740) yhfA 3070909..3071313 (+) 405 WP_001148908.1 OsmC family protein -
  DLJ64_RS15745 (DLJ64_15745) prkB 3071368..3072237 (-) 870 WP_001274680.1 phosphoribulokinase -
  DLJ64_RS15750 (DLJ64_15750) yheU 3072291..3072509 (-) 219 WP_000907085.1 YheU family protein -
  DLJ64_RS15755 (DLJ64_15755) yheT 3072503..3073525 (-) 1023 WP_001521449.1 hydrolase -
  DLJ64_RS15760 (DLJ64_15760) yheS 3073525..3075438 (-) 1914 WP_020232893.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=254642 DLJ64_RS15730 WP_000242755.1 3069975..3070607(-) (crp) [Escherichia coli strain DA33137]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=254642 DLJ64_RS15730 WP_000242755.1 3069975..3070607(-) (crp) [Escherichia coli strain DA33137]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGCCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATAGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467