Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CS557_RS14280 Genome accession   NZ_CP024632
Coordinates   3035261..3036691 (+) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030261..3041691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS14260 (CS557_14265) - 3030972..3031586 (-) 615 WP_099949325.1 DUF6915 family protein -
  CS557_RS14265 (CS557_14270) pbpG 3031749..3032810 (-) 1062 WP_157774475.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CS557_RS14270 (CS557_14275) - 3033022..3033657 (+) 636 WP_004957336.1 response regulator -
  CS557_RS14275 (CS557_14280) pilS 3033673..3035238 (+) 1566 WP_099949327.1 sensor histidine kinase Regulator
  CS557_RS14280 (CS557_14285) pilR 3035261..3036691 (+) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  CS557_RS14285 (CS557_14290) - 3036730..3037905 (-) 1176 WP_004917024.1 S41 family peptidase -
  CS557_RS14290 (CS557_14295) gpmI 3037915..3039459 (-) 1545 WP_099949328.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CS557_RS14295 (CS557_14300) lptG 3039579..3040649 (-) 1071 WP_099949329.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=254605 CS557_RS14280 WP_004917021.1 3035261..3036691(+) (pilR) [Acinetobacter junii strain lzh-X15]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=254605 CS557_RS14280 WP_004917021.1 3035261..3036691(+) (pilR) [Acinetobacter junii strain lzh-X15]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTACCAGATGGAAATGGACTTGATCTCGTTAAACATGTGACTCAAAACTATCCAAACACACCCATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGAGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTCGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCCGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGGCGTTCAGCTCCTATTCAGCAATTACGGATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATCACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGTCTTATCTTATCGGCACACGGCGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTGCGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGCTCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTTCGCATTCATGTGATGGATATCGTATTGCCCCCACTTCGTGAGCGTGGTCAAGATATCTTAATT
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGTGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCATCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAACGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49

Multiple sequence alignment