Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CS557_RS14275 Genome accession   NZ_CP024632
Coordinates   3033673..3035238 (+) Length   521 a.a.
NCBI ID   WP_099949327.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028673..3040238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS14250 (CS557_14255) thrC 3028963..3030102 (+) 1140 WP_002048893.1 threonine synthase -
  CS557_RS14255 (CS557_14260) - 3030169..3030948 (-) 780 WP_099949324.1 hypothetical protein -
  CS557_RS14260 (CS557_14265) - 3030972..3031586 (-) 615 WP_099949325.1 DUF6915 family protein -
  CS557_RS14265 (CS557_14270) pbpG 3031749..3032810 (-) 1062 WP_157774475.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CS557_RS14270 (CS557_14275) - 3033022..3033657 (+) 636 WP_004957336.1 response regulator -
  CS557_RS14275 (CS557_14280) pilS 3033673..3035238 (+) 1566 WP_099949327.1 sensor histidine kinase Regulator
  CS557_RS14280 (CS557_14285) pilR 3035261..3036691 (+) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  CS557_RS14285 (CS557_14290) - 3036730..3037905 (-) 1176 WP_004917024.1 S41 family peptidase -
  CS557_RS14290 (CS557_14295) gpmI 3037915..3039459 (-) 1545 WP_099949328.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59223.21 Da        Isoelectric Point: 6.5633

>NTDB_id=254604 CS557_RS14275 WP_099949327.1 3033673..3035238(+) (pilS) [Acinetobacter junii strain lzh-X15]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYLLTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFSYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQPLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIHQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIQLSLPENLAILFDEKQLRQVLINLIRNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=254604 CS557_RS14275 WP_099949327.1 3033673..3035238(+) (pilS) [Acinetobacter junii strain lzh-X15]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACCGTCTATAAGCTTGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATTTATTAACGGCTGAGCAATTAGCCTCGGACTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTGTACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAACTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTAGTTTATCAACGTTTTATCGGTGATTTTTTTAGTTACAATAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGCAATCCTGCTGCGAATACTTTACTTGGAATTAACGTTCCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCTGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGCCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTAAAATTGGCAGCTTTAGGACAACTTTCTGCAAGT
ATTGCGCACGAAATCAGAAACCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCATCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTTTGGGGATGGCACGCA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCAACTCAGTTTGCCTGAAAATTTAGCAATCCTGTTTGATGAAAAACAATTAAGACAAGTGTTAATCAATCT
TATTCGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.698

99.04

0.651

Multiple sequence alignment