Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CS557_RS06590 Genome accession   NZ_CP024632
Coordinates   1380237..1380944 (-) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain lzh-X15     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375237..1385944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS06575 (CS557_06585) - 1375893..1377467 (+) 1575 WP_099948508.1 urea amidolyase family protein -
  CS557_RS06580 (CS557_06590) - 1377468..1379201 (+) 1734 WP_099948509.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  CS557_RS06585 (CS557_06595) - 1379254..1380033 (-) 780 WP_004915079.1 M48 family metallopeptidase -
  CS557_RS06590 (CS557_06600) crp 1380237..1380944 (-) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  CS557_RS06595 (CS557_06605) - 1381092..1381520 (+) 429 WP_004953612.1 OsmC family protein -
  CS557_RS06600 (CS557_06610) - 1381565..1382365 (-) 801 WP_099949489.1 peptidoglycan DD-metalloendopeptidase family protein -
  CS557_RS06605 (CS557_06615) clpB 1382627..1385206 (+) 2580 WP_099948510.1 ATP-dependent chaperone ClpB -
  CS557_RS06610 (CS557_06620) - 1385371..1385793 (+) 423 WP_004915093.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=254590 CS557_RS06590 WP_004915082.1 1380237..1380944(-) (crp) [Acinetobacter junii strain lzh-X15]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=254590 CS557_RS06590 WP_004915082.1 1380237..1380944(-) (crp) [Acinetobacter junii strain lzh-X15]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTCGTTGCATACTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCAGAAGTAAGAACTCGTGATGTTTGTGAAATCGCTGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCGGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTCAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACGTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404

Multiple sequence alignment