Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SAOUHSC_01228 Genome accession   NC_007795
Coordinates   1179705..1180478 (+) Length   257 a.a.
NCBI ID   YP_499763.1    Uniprot ID   Q2FZ27
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174705..1185478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_01223 - 1175049..1176356 (+) 1308 YP_499759.1 tRNA (uracil-5-)-methyltransferase Gid -
  SAOUHSC_01224 - 1176773..1177669 (+) 897 YP_499760.1 site-specific recombinase -
  SAOUHSC_01225 - 1177666..1178211 (+) 546 YP_499761.1 ATP-dependent protease peptidase subunit -
  SAOUHSC_01226 hslU 1178277..1179680 (+) 1404 YP_499762.1 ATP-dependent protease ATP-binding subunit HslU -
  SAOUHSC_01228 codY 1179705..1180478 (+) 774 YP_499763.1 transcriptional repressor CodY Regulator
  SAOUHSC_01230 - 1180529..1180621 (+) 93 YP_499764.1 hypothetical protein -
  SAOUHSC_01233 - 1181622..1181735 (+) 114 YP_499766.1 hypothetical protein -
  SAOUHSC_01234 tsf 1181770..1182651 (+) 882 YP_499767.1 elongation factor Ts -
  SAOUHSC_01235 pyrH 1182788..1183510 (+) 723 YP_499768.1 uridylate kinase -
  SAOUHSC_01236 frr 1183529..1184083 (+) 555 YP_499769.1 ribosome recycling factor -
  SAOUHSC_01237 - 1184456..1185226 (+) 771 YP_499770.1 undecaprenyl pyrophosphate synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=25457 SAOUHSC_01228 YP_499763.1 1179705..1180478(+) (codY) [Staphylococcus aureus subsp. aureus NCTC 8325]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=25457 SAOUHSC_01228 YP_499763.1 1179705..1180478(+) (codY) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8C7S

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment