Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   SAOUHSC_01637 Genome accession   NC_007795
Coordinates   1556824..1557321 (-) Length   165 a.a.
NCBI ID   YP_500150.2    Uniprot ID   Q2G2I9
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551824..1562321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_01632 - 1551986..1553458 (-) 1473 YP_500145.1 glycine dehydrogenase subunit 2 -
  SAOUHSC_01633 - 1553451..1554797 (-) 1347 YP_500146.1 glycine dehydrogenase subunit 1 -
  SAOUHSC_01634 gcvT 1554817..1555908 (-) 1092 YP_500147.1 glycine cleavage system aminomethyltransferase T -
  SAOUHSC_01635 - 1556067..1556591 (-) 525 YP_500148.1 shikimate kinase -
  SAOUHSC_01636 - 1556581..1556727 (-) 147 YP_500149.1 hypothetical protein -
  SAOUHSC_01637 comGF 1556824..1557321 (-) 498 YP_500150.2 competence protein ComGF Machinery gene
  SAOUHSC_01638 comGE 1557239..1557559 (-) 321 YP_500151.1 hypothetical protein Machinery gene
  SAOUHSC_01639 comGD 1557525..1557971 (-) 447 YP_500152.1 hypothetical protein Machinery gene
  SAOUHSC_01640 comGC 1557949..1558260 (-) 312 YP_500153.1 hypothetical protein Machinery gene
  SAOUHSC_01641 comGB 1558274..1559194 (-) 921 YP_500154.1 hypothetical protein Machinery gene
  SAOUHSC_01643 comGA 1559316..1560290 (-) 975 YP_500155.1 hypothetical protein Machinery gene
  SAOUHSC_01644 - 1560342..1560965 (-) 624 YP_500156.1 hypothetical protein -
  SAOUHSC_01645 - 1560962..1561291 (-) 330 YP_500157.1 hypothetical protein -
  SAOUHSC_01646 - 1561291..1562277 (-) 987 YP_500158.1 glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=25441 SAOUHSC_01637 YP_500150.2 1556824..1557321(-) (comGF) [Staphylococcus aureus subsp. aureus NCTC 8325]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=25441 SAOUHSC_01637 YP_500150.2 1556824..1557321(-) (comGF) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G2I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment