Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   SAOUHSC_01641 Genome accession   NC_007795
Coordinates   1558274..1559194 (-) Length   306 a.a.
NCBI ID   YP_500154.1    Uniprot ID   Q2G2I6
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553274..1564194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_01633 - 1553451..1554797 (-) 1347 YP_500146.1 glycine dehydrogenase subunit 1 -
  SAOUHSC_01634 gcvT 1554817..1555908 (-) 1092 YP_500147.1 glycine cleavage system aminomethyltransferase T -
  SAOUHSC_01635 - 1556067..1556591 (-) 525 YP_500148.1 shikimate kinase -
  SAOUHSC_01636 - 1556581..1556727 (-) 147 YP_500149.1 hypothetical protein -
  SAOUHSC_01637 comGF 1556824..1557321 (-) 498 YP_500150.2 competence protein ComGF Machinery gene
  SAOUHSC_01638 comGE 1557239..1557559 (-) 321 YP_500151.1 hypothetical protein Machinery gene
  SAOUHSC_01639 comGD 1557525..1557971 (-) 447 YP_500152.1 hypothetical protein Machinery gene
  SAOUHSC_01640 comGC 1557949..1558260 (-) 312 YP_500153.1 hypothetical protein Machinery gene
  SAOUHSC_01641 comGB 1558274..1559194 (-) 921 YP_500154.1 hypothetical protein Machinery gene
  SAOUHSC_01643 comGA 1559316..1560290 (-) 975 YP_500155.1 hypothetical protein Machinery gene
  SAOUHSC_01644 - 1560342..1560965 (-) 624 YP_500156.1 hypothetical protein -
  SAOUHSC_01645 - 1560962..1561291 (-) 330 YP_500157.1 hypothetical protein -
  SAOUHSC_01646 - 1561291..1562277 (-) 987 YP_500158.1 glucokinase -
  SAOUHSC_01647 - 1562274..1562477 (-) 204 YP_500159.1 hypothetical protein -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 35431.72 Da        Isoelectric Point: 9.8499

>NTDB_id=25445 SAOUHSC_01641 YP_500154.1 1558274..1559194(-) (comGB) [Staphylococcus aureus subsp. aureus NCTC 8325]
MTYKNKQLGTTILSEISNGAPCNQILSLIGYSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILV
SIFIAMIIILNLTVIPQFQQLYTSMNIQLSSFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKL
PLISGYFQLFKTYFVTNELVLFYKNGITLQSIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFV
LQGEKRGKLEVELKLYSQILVKQIEDKAIKQTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 921 bp        

>NTDB_id=25445 SAOUHSC_01641 YP_500154.1 1558274..1559194(-) (comGB) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGACATATAAAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATC
ACTGATAGGTTATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAG
AAACCGTAAATTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTT
TCTATCTTTATTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATAT
TCAACTATCTTCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAG
TATCTATGTTGGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTA
CCGCTAATATCAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTAT
TACACTTCAATCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAA
CTTATTCAGAAATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTG
CTACAAGGTGAAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAA
AGCGATAAAACAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAA
TTATGTTACCAATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(177-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G2I6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1

Multiple sequence alignment