Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CS873_RS03600 | Genome accession | NZ_CP024610 |
| Coordinates | 739525..739830 (+) | Length | 101 a.a. |
| NCBI ID | WP_099974509.1 | Uniprot ID | - |
| Organism | Lactobacillus terrae strain NIBRBAC000499792 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 734525..744830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS873_RS03575 | - | 734613..736196 (+) | 1584 | WP_099974504.1 | APC family permease | - |
| CS873_RS03580 | - | 736200..736724 (+) | 525 | WP_099974505.1 | VanZ family protein | - |
| CS873_RS03585 | - | 736787..737506 (+) | 720 | WP_099974506.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CS873_RS03590 | comGA | 737578..738546 (+) | 969 | WP_099974507.1 | competence type IV pilus ATPase ComGA | - |
| CS873_RS03595 | - | 738524..739525 (+) | 1002 | WP_099974508.1 | type II secretion system F family protein | - |
| CS873_RS03600 | comGC | 739525..739830 (+) | 306 | WP_099974509.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CS873_RS03605 | - | 739808..740254 (+) | 447 | WP_099974510.1 | type II secretion system protein | - |
| CS873_RS03610 | - | 740238..740519 (+) | 282 | WP_099974511.1 | hypothetical protein | - |
| CS873_RS03615 | - | 740494..740985 (+) | 492 | WP_099974512.1 | ComGF family competence protein | - |
| CS873_RS03620 | - | 741229..742242 (+) | 1014 | WP_099974513.1 | class I SAM-dependent methyltransferase | - |
| CS873_RS03625 | - | 742390..744063 (+) | 1674 | WP_099974514.1 | oleate hydratase | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11458.46 Da Isoelectric Point: 10.1520
>NTDB_id=254222 CS873_RS03600 WP_099974509.1 739525..739830(+) (comGC) [Lactobacillus terrae strain NIBRBAC000499792]
MKKKLLKKTKKAFTLIEMVIVLFIISLLLLIILPNLGEQKKSASNKTDESFRTTLQTQVDLYDGNAKSFDDLENAHLISN
KQMKKATDEGYTIINGNVEKK
MKKKLLKKTKKAFTLIEMVIVLFIISLLLLIILPNLGEQKKSASNKTDESFRTTLQTQVDLYDGNAKSFDDLENAHLISN
KQMKKATDEGYTIINGNVEKK
Nucleotide
Download Length: 306 bp
>NTDB_id=254222 CS873_RS03600 WP_099974509.1 739525..739830(+) (comGC) [Lactobacillus terrae strain NIBRBAC000499792]
ATGAAGAAAAAATTATTGAAGAAAACTAAAAAGGCATTTACTCTTATTGAAATGGTTATCGTATTGTTTATTATTTCCTT
GCTACTTCTGATTATTTTGCCTAATTTAGGGGAGCAAAAAAAATCAGCATCAAATAAAACTGATGAATCGTTTAGAACAA
CTCTTCAAACACAAGTAGATTTGTACGATGGAAATGCTAAAAGTTTTGATGACCTAGAGAATGCACATCTAATTTCAAAT
AAACAAATGAAAAAAGCCACAGATGAGGGATACACTATCATAAATGGTAATGTTGAGAAAAAATAA
ATGAAGAAAAAATTATTGAAGAAAACTAAAAAGGCATTTACTCTTATTGAAATGGTTATCGTATTGTTTATTATTTCCTT
GCTACTTCTGATTATTTTGCCTAATTTAGGGGAGCAAAAAAAATCAGCATCAAATAAAACTGATGAATCGTTTAGAACAA
CTCTTCAAACACAAGTAGATTTGTACGATGGAAATGCTAAAAGTTTTGATGACCTAGAGAATGCACATCTAATTTCAAAT
AAACAAATGAAAAAAGCCACAGATGAGGGATACACTATCATAAATGGTAATGTTGAGAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Latilactobacillus sakei subsp. sakei 23K |
52 |
99.01 |
0.515 |
| comGC | Staphylococcus aureus MW2 |
38.144 |
96.04 |
0.366 |
| comGC | Staphylococcus aureus N315 |
38.144 |
96.04 |
0.366 |