Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DLJ51_RS05590 Genome accession   NZ_CP029560
Coordinates   1141886..1143637 (-) Length   583 a.a.
NCBI ID   WP_109982610.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1136886..1148637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ51_RS05570 (DLJ51_05570) - 1137803..1138312 (+) 510 WP_002963409.1 HdeD family acid-resistance protein -
  DLJ51_RS05575 (DLJ51_05575) - 1139014..1140120 (+) 1107 WP_021673982.1 AAA family ATPase -
  DLJ51_RS05580 (DLJ51_05580) pnuC 1140211..1140957 (+) 747 WP_231909534.1 nicotinamide riboside transporter PnuC -
  DLJ51_RS05585 (DLJ51_05585) - 1140954..1141718 (+) 765 WP_019774957.1 NUDIX domain-containing protein -
  DLJ51_RS05590 (DLJ51_05590) rcrQ 1141886..1143637 (-) 1752 WP_109982610.1 ABC transporter ATP-binding protein Regulator
  DLJ51_RS05595 (DLJ51_05595) rcrP 1143887..1145623 (-) 1737 WP_109982611.1 ABC transporter ATP-binding protein Regulator
  DLJ51_RS05605 (DLJ51_05605) - 1145961..1146347 (-) 387 WP_109982612.1 hypothetical protein -
  DLJ51_RS05610 (DLJ51_05610) - 1146411..1148297 (-) 1887 WP_109982613.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 65246.60 Da        Isoelectric Point: 6.2792

>NTDB_id=254205 DLJ51_RS05590 WP_109982610.1 1141886..1143637(-) (rcrQ) [Streptococcus sobrinus strain NIDR 6715-7]
MSKNVFLRLWDYLKHYQSTLYLAVFLKIVAAVASVIEPFILGLMVTELTSSLMAGRPIDGQKILFLIIVYIIRGLLSEIG
SYGSNFFMTRTVQGSIHDLRHDLSHKINKIPVSYFDKHKFGDMLGRFTSDVETVSNALQQSFLQVINAVLTLIMVVAMVL
YLNIQLGLFVIATIPITYFSASYLLKKSQPYFKRQADVLGDMNGFVQENLTGFNVIKLYGREEASAKEFDGILDELQEIG
FKASFISGIMMPILNAISDSSYLIIAVWGGLKVIAGKLTIGNLQAFVQYLWQIGQPIQTLTQLASMLQSARSSLERIFAV
LDENNEVAEVTEHLSHDLTGQVSFNHVDFQYVEGKPLIRDFNLDVKPGQMIAIVGPTGAGKTTLINLLMRFYDVTKGAIT
VDGHDIRHLSRQDYRRQFGMVLQDAWLYEGSIKDNLRFAKLDATDEEIIAAAKAANVDHFIRTLPGGYNMEMNQESSNIS
LGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMIRLMEGRTSFVIAHRLSTIQEADKILVLKDGQIIEQGTH
DSLLADKGFYHDLYMSQFSDQAG

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=254205 DLJ51_RS05590 WP_109982610.1 1141886..1143637(-) (rcrQ) [Streptococcus sobrinus strain NIDR 6715-7]
ATGTCAAAAAATGTCTTTTTACGTCTCTGGGACTATCTCAAACATTATCAAAGCACCCTCTATCTAGCAGTCTTTCTCAA
GATAGTTGCAGCAGTAGCTAGTGTCATCGAGCCCTTTATTTTGGGCCTTATGGTGACCGAATTGACCTCCAGCCTTATGG
CTGGACGGCCTATTGATGGGCAGAAGATTCTCTTTTTGATTATTGTCTATATCATTCGGGGACTGCTCTCTGAAATTGGT
AGTTACGGTTCCAACTTTTTCATGACTAGGACGGTGCAAGGTTCCATTCACGATTTGCGGCACGACCTCAGTCATAAAAT
CAATAAGATTCCCGTTTCTTACTTTGATAAGCATAAATTCGGTGACATGCTGGGCCGTTTTACCAGCGATGTCGAAACGG
TTTCCAATGCCCTGCAACAATCCTTCCTCCAGGTTATCAATGCAGTTTTGACCCTGATTATGGTTGTTGCCATGGTTCTC
TACCTCAATATCCAGCTGGGACTCTTTGTCATCGCAACTATTCCCATCACCTATTTTTCGGCTTCTTATTTGCTTAAGAA
ATCTCAGCCCTATTTCAAACGTCAGGCTGACGTTCTGGGAGATATGAATGGCTTTGTTCAGGAAAACCTAACCGGTTTCA
ATGTCATCAAGCTCTACGGTCGTGAAGAAGCTTCCGCCAAGGAATTTGACGGTATCCTCGATGAATTACAGGAGATCGGT
TTCAAGGCCAGCTTTATCTCCGGTATCATGATGCCTATTCTCAATGCCATCTCGGATTCCTCCTACCTGATTATTGCGGT
CTGGGGCGGGCTCAAGGTTATCGCAGGTAAGTTGACGATTGGTAATCTCCAGGCCTTTGTTCAATATCTCTGGCAGATTG
GTCAACCTATCCAAACCCTGACCCAGCTTGCCTCCATGCTCCAGTCAGCTCGCTCATCTCTAGAAAGGATTTTCGCCGTT
CTGGATGAGAATAATGAAGTAGCAGAAGTAACAGAGCACCTTTCTCATGACCTGACTGGACAAGTTTCCTTCAATCATGT
GGATTTCCAATATGTAGAAGGCAAGCCGCTGATTCGGGACTTCAATTTGGATGTCAAGCCTGGCCAAATGATTGCCATCG
TCGGTCCAACGGGGGCTGGTAAGACAACCTTGATTAATCTCCTCATGCGGTTCTACGATGTTACCAAGGGAGCCATTACG
GTGGATGGCCACGATATTCGCCACCTGTCTCGTCAGGACTATCGCCGACAGTTCGGCATGGTGCTCCAGGATGCCTGGCT
CTACGAAGGAAGCATCAAGGACAATCTTCGTTTTGCTAAACTGGATGCGACCGATGAAGAAATCATTGCCGCAGCCAAGG
CAGCCAATGTTGACCACTTTATCCGCACCCTGCCAGGTGGCTACAATATGGAAATGAATCAGGAATCCAGCAACATCTCC
TTGGGTCAAAAGCAGCTTCTGACCATTGCTAGGGCCCTCTTGGCTGACCCTAAGATTTTGATTTTGGATGAAGCAACCTC
CTCGGTTGATACCCGACTGGAGCTTCTCATTCAGAAGGCCATGATCCGACTGATGGAAGGTCGGACCAGTTTTGTTATTG
CCCACCGTCTCTCCACCATTCAAGAGGCGGATAAGATTCTCGTCCTCAAGGATGGTCAAATCATTGAGCAGGGCACCCAC
GACAGTCTCTTGGCTGACAAAGGTTTCTACCACGACCTCTATATGAGCCAGTTTAGTGACCAAGCGGGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.178

100

0.443

Multiple sequence alignment