Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CR152_RS12415 Genome accession   NZ_CP024608
Coordinates   2725669..2727114 (+) Length   481 a.a.
NCBI ID   WP_099875184.1    Uniprot ID   A0A2D2DJS8
Organism   Massilia violaceinigra strain B2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720669..2732114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR152_RS12390 (CR152_12340) - 2721192..2722007 (+) 816 WP_099875180.1 ABC transporter permease -
  CR152_RS12395 (CR152_12345) - 2722009..2722806 (+) 798 WP_099875181.1 ABC transporter ATP-binding protein -
  CR152_RS12400 (CR152_12350) - 2722896..2723699 (+) 804 WP_099875182.1 inner membrane protein YpjD -
  CR152_RS12405 (CR152_12355) - 2723696..2723944 (+) 249 WP_099875183.1 PP0621 family protein -
  CR152_RS12410 (CR152_12360) - 2723948..2725672 (+) 1725 WP_099882254.1 PAS domain-containing sensor histidine kinase -
  CR152_RS12415 (CR152_12365) pilR 2725669..2727114 (+) 1446 WP_099875184.1 sigma-54 dependent transcriptional regulator Regulator
  CR152_RS12420 (CR152_12370) - 2727691..2730651 (+) 2961 WP_099875185.1 ribonucleoside-diphosphate reductase subunit alpha -
  CR152_RS12425 (CR152_12375) - 2730748..2731872 (+) 1125 WP_099882256.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 51579.06 Da        Isoelectric Point: 4.8418

>NTDB_id=254205 CR152_RS12415 WP_099875184.1 2725669..2727114(+) (pilR) [Massilia violaceinigra strain B2]
MTSPRVLVVDDEADLRELLEITLVRMGLDVDSAETLREARAFLAQNDYGLILTDMRLPDGLGLELVQEVNASNKSTPIAV
VTAYGSAENAVVALKAGAFDYVSKPVVLDDLRVMVQSALRLSAPSTQTGSPAAAGTASRLIGESAVMQSLRNQIERLARS
MAPIAITGESGSGKELVAREIHARSSRAGKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADERDGFFHAANGGTLMLDE
VADLPLAMQVKLLRAIQERRVRKIGATSEEPVDVRIISATHQNLAQCVETGKFRQDLFYRLNVIELSVPPLRERLDDLGV
LVDGMLARLAGPGQKAALGPQVLETLSTYSFPGNVRELENVLERALAFANDGVIEVGDLSLKGARVAERPAPAAEAVVAP
VPAAVQAAMAPHTAAAPVSASGPAELPSNLPNYLEQVEREIILRALTQTQFNRTQAALLLGISFRQLRYQMQKLDIQEPE
G

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=254205 CR152_RS12415 WP_099875184.1 2725669..2727114(+) (pilR) [Massilia violaceinigra strain B2]
ATGACATCACCCCGCGTACTGGTCGTCGATGACGAGGCGGATTTACGCGAACTGCTGGAAATCACGCTGGTCAGGATGGG
GCTCGATGTGGACAGCGCCGAAACGCTGCGCGAGGCGCGCGCTTTCCTGGCGCAGAACGATTACGGCCTGATCCTGACCG
ACATGCGCCTGCCCGACGGCCTGGGCCTGGAACTGGTGCAGGAAGTGAACGCTTCCAACAAATCGACCCCGATCGCGGTC
GTGACCGCCTACGGCAGCGCCGAAAACGCGGTGGTGGCCTTGAAGGCGGGCGCCTTCGATTACGTGTCCAAGCCGGTGGT
GCTGGACGATCTGCGCGTCATGGTGCAGTCGGCCCTGCGCCTGTCGGCCCCGTCCACGCAGACCGGCAGCCCGGCCGCCG
CCGGCACGGCCTCGCGCCTGATCGGCGAATCGGCCGTAATGCAGTCGCTGCGCAATCAGATCGAACGGCTGGCGCGCTCG
ATGGCGCCGATTGCCATTACGGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCGCGCGAAATCCACGCCCGCAGTTCGCG
CGCGGGTAAGCCCTTCATTGCCGTGAACTGCGGCGCGATTCCCGAAGCGCTGATGGAAGCCGAGTTTTTCGGCTACCGCA
AGGGCGCGTTTACGGGCGCGGCCGACGAGCGCGACGGATTTTTCCATGCGGCCAACGGCGGCACCCTGATGCTCGATGAG
GTGGCCGATCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAACGGCGCGTGCGCAAGATCGGCGCCAC
CAGCGAGGAGCCGGTCGATGTGCGCATCATCAGCGCCACGCACCAGAACCTGGCGCAGTGCGTCGAGACCGGCAAGTTCC
GCCAGGATCTGTTTTACCGCCTGAATGTGATCGAATTGAGCGTGCCGCCGCTGCGCGAGCGGCTCGACGACCTGGGTGTG
CTGGTCGATGGCATGCTGGCGCGCCTGGCCGGACCGGGGCAGAAAGCCGCGCTCGGGCCGCAGGTGCTGGAAACCTTGAG
CACGTATTCGTTTCCGGGCAATGTGCGCGAGCTCGAGAACGTGCTGGAACGGGCGCTGGCGTTCGCCAACGATGGCGTGA
TCGAAGTGGGCGACCTGTCGCTCAAGGGCGCGCGGGTGGCCGAGCGGCCGGCGCCGGCGGCCGAGGCGGTGGTGGCGCCG
GTGCCGGCGGCCGTGCAGGCGGCGATGGCGCCGCACACGGCGGCCGCGCCGGTGAGTGCGAGCGGGCCGGCGGAGTTGCC
TAGCAACTTGCCCAACTATCTGGAGCAGGTCGAGCGCGAGATCATTCTGCGTGCGCTGACCCAAACCCAGTTCAACCGCA
CCCAGGCGGCCCTGCTGCTGGGGATCAGTTTTCGGCAGCTGCGCTATCAGATGCAGAAGCTCGATATCCAGGAGCCGGAG
GGCTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(434-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D2DJS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.347

99.376

0.53
  pilR Acinetobacter baumannii strain A118

45.588

98.96

0.451

Multiple sequence alignment