Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AUF16_RS12300 Genome accession   NZ_CP024590
Coordinates   2477501..2478007 (-) Length   168 a.a.
NCBI ID   WP_016179291.1    Uniprot ID   -
Organism   Enterococcus avium strain FDAARGOS_184     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2472501..2483007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS12280 (AUF16_12295) dnaB 2473156..2474517 (-) 1362 WP_016179294.1 replicative DNA helicase -
  AUF16_RS12285 (AUF16_12300) rplI 2474646..2475098 (-) 453 WP_016179293.1 50S ribosomal protein L9 -
  AUF16_RS12290 (AUF16_12305) - 2475095..2477059 (-) 1965 WP_049220784.1 DHH family phosphoesterase -
  AUF16_RS12295 (AUF16_12310) rpsR 2477244..2477477 (-) 234 WP_010747412.1 30S ribosomal protein S18 -
  AUF16_RS12300 (AUF16_12315) ssb 2477501..2478007 (-) 507 WP_016179291.1 single-stranded DNA-binding protein Machinery gene
  AUF16_RS12305 (AUF16_12320) rpsF 2478052..2478354 (-) 303 WP_010742561.1 30S ribosomal protein S6 -
  AUF16_RS12310 (AUF16_12325) gyrA 2478538..2481051 (-) 2514 WP_053089213.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18661.28 Da        Isoelectric Point: 4.7200

>NTDB_id=254100 AUF16_RS12300 WP_016179291.1 2477501..2478007(-) (ssb) [Enterococcus avium strain FDAARGOS_184]
MINNVVLVGRLTKDPDLRYTANGTGVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTASEQRQQNPSSGDSFQGGGNNFNNNYNQSSQSAKNTMPDFDRDSDPFSGSSID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=254100 AUF16_RS12300 WP_016179291.1 2477501..2478007(-) (ssb) [Enterococcus avium strain FDAARGOS_184]
TTGATTAATAATGTTGTACTAGTTGGTCGTTTAACAAAGGATCCTGATTTACGCTACACCGCAAATGGTACAGGTGTTGC
CACGTTTACTTTAGCTGTGAATCGTAATTTTACGAATCAAAGCGGGAATCGCGAGGCAGATTTTATCAATTGTGTAATTT
GGCGGAAATCAGCAGAAACTTTAGCTAATTATGCGCGCAAAGGAACTCTTTTAGGTGTGACTGGCCGTATCCAAACAAGA
AATTATGAAAATCAGCAAGGGCAACGTGTCTATGTGACAGAAGTTGTTGCTGAGAATTTCCAATTATTGGAATCTCGTAC
TGCAAGTGAACAACGTCAACAGAACCCAAGTTCCGGTGATAGCTTCCAAGGTGGGGGAAATAATTTTAACAACAATTATA
ATCAATCCTCTCAGTCAGCTAAGAACACTATGCCTGACTTCGATCGAGATTCAGATCCATTTAGTGGATCCTCTATCGAC
ATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.798

100

0.655
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.601
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

63.095

0.381

Multiple sequence alignment