Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DKG71_RS29595 Genome accession   NZ_CP029541
Coordinates   6858408..6860066 (+) Length   552 a.a.
NCBI ID   WP_109892800.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-S7GS2     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6853408..6865066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS29565 (DKG71_29565) lepB 6853634..6854806 (+) 1173 WP_109892796.1 signal peptidase I -
  DKG71_RS29570 (DKG71_29570) lepB 6854748..6855719 (+) 972 WP_109896485.1 signal peptidase I -
  DKG71_RS29575 (DKG71_29575) lepB 6855774..6856502 (+) 729 WP_109892798.1 signal peptidase I -
  DKG71_RS29580 (DKG71_29580) - 6856687..6857142 (+) 456 WP_109896487.1 NUDIX hydrolase -
  DKG71_RS29585 (DKG71_29585) - 6857181..6857489 (+) 309 WP_003980220.1 DUF2469 domain-containing protein -
  DKG71_RS44255 - 6858058..6858408 (+) 351 Protein_5821 YraN family protein -
  DKG71_RS29595 (DKG71_29595) comM 6858408..6860066 (+) 1659 WP_109892800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DKG71_RS29600 (DKG71_29600) dprA 6860069..6861379 (+) 1311 WP_204165942.1 DNA-processing protein DprA -
  DKG71_RS29605 (DKG71_29605) whiG 6861741..6862577 (+) 837 WP_026169189.1 RNA polymerase sigma factor WhiG -
  DKG71_RS29610 (DKG71_29610) - 6862705..6863244 (+) 540 WP_162597068.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 57703.14 Da        Isoelectric Point: 7.7407

>NTDB_id=254036 DKG71_RS29595 WP_109892800.1 6858408..6860066(+) (comM) [Streptomyces sp. NEAU-S7GS2]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLIESRERVRAAVVNSGAEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERLAPRELTDLMMIGELGLDGRVRPVRGVLPAVLAAADAGYRQVVVPEQTVAEASLVPGISVLGVRT
LRQLIAVLADEPVPDEEDPRDEGRPDPSLAGLVVPGTGVGAGLPPGDHTPDLADVAGQHSARRALEVAAAGRHHIFFKGP
PGAGKTMLAERLPGLLPPLSPKESPEVTAVHSVAGTLPPGQPLVHRPPYCAPHHSATMASLVGGGTGLPRPGAVSLAHHG
VLFVDEAAECSPRVLDALRQPLESGHVVVARAAGMMRMPARILLALAANPCPCGRHGTTGGGCECRPSTIRRYRARLSGP
LMDRVDLRIAVEPVARAELIALGRGVETTAAVAERVRTARERAAARFAGTPWHTNSEVPGHELRTRWQVHPGALAQAERD
LECGLLTARGLDRVLRVAWTAADLAGRDRPTREDVNWALELRTGVRRGALTAAGGGGDHHETATARPPHEQR

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=254036 DKG71_RS29595 WP_109892800.1 6858408..6860066(+) (comM) [Streptomyces sp. NEAU-S7GS2]
ATGGGATTCGCCCGCACCTGCTCCGTCGCCCTGGTGGGGGTCGAAGGCGTCGTCGTCGAGGTCCAGGCCGACCTGGAGCC
CGGTGTCGCCGCCTTCACCCTCGTCGGCCTCCCCGACAAGAGCCTCATCGAGTCCCGGGAGCGGGTGCGCGCCGCCGTCG
TGAATTCCGGCGCCGAATGGCCGCAGAAGAAGCTCACCGTCGGCCTCAGCCCGGCCTCCGTACCCAAAGGCGGCAGCGGC
TTCGACCTGGCCGTGGCCTGCGCGGTCCTCGGCGCCGCCGAGCGCCTGGCCCCCCGCGAACTCACCGACCTGATGATGAT
CGGCGAACTGGGCCTGGACGGCCGCGTCCGCCCCGTACGCGGAGTGCTGCCGGCCGTACTCGCCGCCGCCGACGCCGGAT
ACCGCCAGGTCGTCGTACCGGAACAGACCGTTGCCGAGGCCTCGCTCGTCCCCGGCATCTCCGTCCTCGGCGTCCGCACC
CTGCGCCAGCTCATCGCCGTCCTCGCCGACGAACCCGTGCCCGACGAGGAAGACCCCCGGGACGAAGGCCGCCCCGACCC
CTCGCTCGCCGGGCTGGTCGTGCCCGGAACCGGCGTCGGTGCGGGCCTGCCACCCGGGGACCACACACCCGACCTCGCCG
ACGTCGCAGGCCAGCACAGCGCCCGACGCGCCCTGGAAGTAGCCGCCGCCGGACGCCACCACATCTTCTTCAAAGGCCCG
CCCGGCGCCGGCAAAACCATGCTCGCCGAACGCCTCCCCGGGCTGCTGCCACCCCTGTCGCCCAAGGAATCCCCGGAGGT
CACCGCCGTCCACTCGGTGGCCGGCACCCTCCCGCCGGGCCAGCCCCTCGTCCACCGGCCGCCCTACTGCGCCCCGCACC
ACTCCGCGACGATGGCCTCCCTCGTCGGCGGCGGCACCGGACTGCCCCGCCCCGGCGCCGTATCCCTCGCCCACCACGGC
GTGCTGTTCGTGGACGAGGCCGCGGAGTGCAGCCCACGCGTCCTGGACGCACTGCGCCAGCCACTGGAGTCCGGTCATGT
CGTCGTCGCGCGCGCCGCGGGCATGATGCGCATGCCCGCCCGCATCCTCCTCGCCCTCGCGGCCAACCCCTGTCCCTGCG
GACGGCACGGCACCACCGGCGGCGGCTGCGAATGCCGGCCGTCGACCATCCGCCGCTACCGGGCCCGGCTCTCCGGGCCC
CTGATGGACCGGGTGGACCTGCGGATCGCCGTGGAACCGGTCGCCCGCGCCGAACTGATCGCACTCGGTCGGGGCGTGGA
AACCACCGCGGCAGTGGCCGAACGCGTACGGACCGCCCGTGAACGCGCCGCGGCCCGCTTCGCCGGCACACCGTGGCACA
CCAACAGCGAGGTCCCCGGGCACGAGCTGCGCACCCGCTGGCAGGTCCACCCCGGTGCACTGGCGCAGGCGGAACGCGAC
CTCGAATGCGGCCTCCTCACCGCCCGCGGCCTCGACCGCGTCCTCCGCGTCGCCTGGACCGCCGCCGACCTCGCCGGCCG
CGACCGCCCCACCAGGGAAGACGTCAACTGGGCCCTGGAACTCCGCACCGGCGTACGCCGCGGCGCGCTGACGGCGGCCG
GCGGGGGCGGAGACCACCACGAGACCGCGACCGCCCGGCCGCCGCACGAGCAGAGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-522)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

41.255

95.29

0.393
  comM Vibrio cholerae strain A1552

41.255

95.29

0.393
  comM Haemophilus influenzae Rd KW20

38.973

95.29

0.371
  comM Vibrio campbellii strain DS40M4

38.636

95.652

0.37
  comM Acinetobacter baylyi ADP1

38.52

95.471

0.368

Multiple sequence alignment