Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DKG71_RS11475 Genome accession   NZ_CP029541
Coordinates   2778357..2780489 (-) Length   710 a.a.
NCBI ID   WP_093645283.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-S7GS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773357..2785489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS11460 (DKG71_11460) - 2774136..2775119 (-) 984 WP_018091896.1 TerC family protein -
  DKG71_RS11465 (DKG71_11465) - 2775334..2777445 (-) 2112 WP_109889019.1 TerD family protein -
  DKG71_RS11470 (DKG71_11470) - 2777547..2778125 (-) 579 WP_018091898.1 TerD family protein -
  DKG71_RS11475 (DKG71_11475) uvrB 2778357..2780489 (-) 2133 WP_093645283.1 excinuclease ABC subunit UvrB Machinery gene
  DKG71_RS11485 (DKG71_11485) - 2781241..2782128 (+) 888 WP_093645285.1 glycerophosphodiester phosphodiesterase family protein -
  DKG71_RS11490 (DKG71_11490) - 2782215..2782808 (+) 594 WP_109889021.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DKG71_RS11495 (DKG71_11495) - 2782860..2783402 (+) 543 WP_018091902.1 DUF1697 domain-containing protein -
  DKG71_RS11500 (DKG71_11500) - 2783422..2783883 (-) 462 WP_018091903.1 type II toxin-antitoxin system PemK/MazF family toxin -
  DKG71_RS11505 (DKG71_11505) - 2784023..2785453 (+) 1431 WP_109889023.1 WGR domain-containing protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 79646.55 Da        Isoelectric Point: 4.8641

>NTDB_id=253987 DKG71_RS11475 WP_093645283.1 2778357..2780489(-) (uvrB) [Streptomyces sp. NEAU-S7GS2]
MRPVSKIERTVAPFEVVSPYQPNGDQPAAIAELDRRIRGGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGDEIDRDQLLRRFVDIQYTRNDVAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDRELYIFPASHYIAGPERMERAIAGIEAELADSLATMEKQGKHLEAQRLRMRTTYDIEMMRQIGSCSGIENYSMH
MDGREPGSAPNTLIDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVEHGFRLPSALDNRPLKWEEFLERIGQTVYL
SATPGKYELARGDGFVEQIIRPTGLVDPEVVVKPTDGQIDDLVHEIRQRTEKNERILVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGSALIQTIGRAARNVSGQVHMY
ADKVTPAMEKAIDETNRRREKQLAYNKENGIDPQPLRKKIGDIVATIAREEIDTQELLGTGFRKGAEAKDAKGKAPVPAL
GAKGAKGKGAKAGAELTDRPAAELAEIIEEMTERMRAAAAELQFEVAARLRDEVGELKKELRQMREAGVK

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=253987 DKG71_RS11475 WP_093645283.1 2778357..2780489(-) (uvrB) [Streptomyces sp. NEAU-S7GS2]
ATGCGGCCCGTATCGAAGATCGAACGCACGGTGGCGCCTTTCGAGGTCGTCAGCCCCTACCAGCCCAATGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGACCGGCGTATCCGCGGGGGTGAAAAGGATGTCGTCCTGCTGGGCGCGACCGGCACCGGCA
AGTCGGCGACCACCGCGTGGATGATCGAGAAGCTGCAGCGCCCGACGCTTGTGATGGCGCCCAACAAGACGCTTGCGGCC
CAGCTCGCCAACGAATTCCGCGAGCTGCTGCCGAACAACGCCGTCGAGTACTTCGTCTCCTATTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCCGATACGTACATCGAGAAGGACTCCTCCATCAACGAGGAGGTCGAACGGCTGCGCCACT
CCGCGACGAATTCCCTGCTCACCCGGCGTGATGTCGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTGGGCACCCCG
CAGGAGTACGTCGACCGGATGGTGCCGCTGAAGGTCGGCGACGAAATCGACCGCGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACGTGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTATGAAGAGCTGGCCGTGCGGATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTGCACCCGCTCACCGGC
GAGGTGATCAGCGACGACCGGGAGCTGTACATCTTCCCGGCCAGCCACTACATCGCGGGCCCCGAGCGCATGGAGCGGGC
CATCGCGGGGATCGAGGCCGAGCTGGCCGACAGCCTCGCCACGATGGAGAAGCAGGGCAAGCATCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGATGCGTCAGATCGGCTCCTGCTCGGGCATCGAGAACTATTCGATGCAC
ATGGACGGCCGTGAGCCCGGCTCCGCGCCCAACACCCTCATCGACTACTTCCCGGACGACTTCCTCCTGGTCATCGACGA
GTCGCATGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCGCGCAAGCGGACCCTGGTCGAGCACGGCT
TCCGGCTGCCGTCCGCCCTGGACAACCGCCCGCTGAAGTGGGAAGAGTTCCTGGAGCGCATCGGCCAGACCGTCTACCTG
TCCGCGACCCCCGGGAAGTACGAGCTCGCGCGCGGCGACGGTTTCGTCGAGCAGATCATTCGTCCGACCGGGCTGGTCGA
CCCGGAGGTGGTGGTCAAGCCCACCGACGGGCAGATCGACGACCTGGTGCACGAGATCCGGCAGCGGACGGAGAAGAACG
AACGCATCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTCGAGCTCGGCATCCAGGTC
CGCTATCTGCACAGCGACGTGGACACCCTGCGCCGGGTGGAGCTGCTGCGGGAGCTGCGATCGGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGGGAGGGCCTCGACCTCCCCGAGGTCTCCCTGGTGGCCATTCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGTTCGGCGCTCATCCAGACCATCGGACGTGCGGCGCGCAATGTCTCCGGACAGGTGCACATGTAC
GCCGACAAGGTCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGCTGGCGTACAACAA
GGAGAACGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCGGCGACATCGTCGCCACCATCGCCCGCGAGGAGATCGACA
CCCAGGAGCTGCTGGGCACGGGCTTCCGCAAGGGGGCCGAGGCCAAGGATGCCAAGGGCAAGGCACCGGTCCCGGCGCTC
GGTGCCAAGGGCGCGAAGGGCAAGGGCGCCAAGGCGGGCGCGGAGCTGACGGACCGTCCCGCCGCCGAACTGGCCGAGAT
CATCGAGGAGATGACGGAGCGGATGCGCGCCGCCGCCGCGGAGCTGCAGTTCGAGGTCGCCGCCCGGCTGCGCGACGAGG
TGGGTGAACTGAAGAAGGAGCTGCGGCAAATGAGGGAGGCCGGGGTGAAGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(666-700)

Type III restriction enzyme, res subunit (ResIII)

(23-134)

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.726

96.62

0.558
  uvrB Streptococcus pneumoniae R6

57.726

96.62

0.558
  uvrB Streptococcus pneumoniae D39

57.726

96.62

0.558