Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CRH16_RS01375 Genome accession   NZ_CP024412
Coordinates   254864..255982 (+) Length   372 a.a.
NCBI ID   WP_016527507.1    Uniprot ID   A0A6I5WMI7
Organism   Glaesserella parasuis strain SH0104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 249864..260982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS12270 - 249984..250208 (-) 225 WP_202115819.1 transposase -
  CRH16_RS12275 - 250367..250456 (-) 90 WP_419471289.1 hypothetical protein -
  CRH16_RS01350 dusA 250616..251587 (-) 972 WP_112062792.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CRH16_RS01355 tehB 251863..252726 (-) 864 WP_015939662.1 SAM-dependent methyltransferase TehB -
  CRH16_RS01360 - 252947..253144 (-) 198 WP_075592578.1 cation transporter -
  CRH16_RS01365 - 253177..254148 (+) 972 WP_005713081.1 aminodeoxychorismate synthase component I -
  CRH16_RS01370 - 254126..254731 (+) 606 WP_035489995.1 aminotransferase class IV family protein -
  CRH16_RS01375 recA 254864..255982 (+) 1119 WP_016527507.1 recombinase RecA Machinery gene
  CRH16_RS01380 recX 256035..256490 (+) 456 WP_015939657.1 recombination regulator RecX -
  CRH16_RS01385 yqfB 256483..256788 (+) 306 WP_015939656.1 N(4)-acetylcytidine aminohydrolase -
  CRH16_RS01390 - 256796..257326 (+) 531 WP_021109872.1 type I DNA topoisomerase -
  CRH16_RS01395 - 257326..257880 (+) 555 WP_010786180.1 Sua5/YciO/YrdC/YwlC family protein -
  CRH16_RS01400 aroE 257884..258702 (+) 819 WP_015939654.1 shikimate dehydrogenase -
  CRH16_RS01425 ubiK 259387..259647 (+) 261 WP_010786182.1 ubiquinone biosynthesis accessory factor UbiK -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 40299.98 Da        Isoelectric Point: 4.7535

>NTDB_id=253404 CRH16_RS01375 WP_016527507.1 254864..255982(+) (recA) [Glaesserella parasuis strain SH0104]
MAENKKSSKNNTVIKQVPPEQKQQALDAALAQIEKQFGKGSIMKLGQTEQLDIESVSTGSLGLDLALGIGGLPMGRIVEI
YGPESSGKTTLTLSLIAQAQKGNKTCAFIDAEHALDPVYARNLGVNTDDLLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKNTNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRCGVVKDGDEIIGSETKVKVVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIKKSGAWFSYDGTKIGQGKNN
AVKWLKENPEIADKLEQEIRNTLASNPNSLLKVTASDSIDESDVEEFNEEEL

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=253404 CRH16_RS01375 WP_016527507.1 254864..255982(+) (recA) [Glaesserella parasuis strain SH0104]
ATGGCTGAGAATAAAAAATCTTCAAAAAACAATACCGTCATTAAACAAGTTCCACCAGAACAGAAACAACAAGCCTTAGA
TGCGGCACTAGCTCAAATTGAAAAACAATTTGGTAAAGGCTCTATTATGAAATTAGGGCAGACTGAGCAATTAGATATTG
AGTCTGTTTCAACAGGCTCACTAGGGCTAGACCTTGCTTTAGGTATTGGTGGCTTGCCAATGGGGCGTATTGTTGAAATC
TATGGGCCAGAATCGTCAGGTAAGACAACATTAACACTTTCTTTGATTGCTCAAGCTCAAAAAGGCAATAAAACCTGTGC
TTTTATTGACGCTGAACACGCTTTAGATCCTGTCTATGCTCGCAATTTAGGGGTAAATACAGATGATTTATTGATTTCTC
AACCAGATAATGGTGAACAAGCTCTTGAAATCTGTGATGCGTTAGTTCGTTCAGGGGCAGTTGATGTTATTATTGTGGAC
TCTGTCGCTGCACTTACGCCAAAAGCTGAAATTGAAGGGGATATGGGCGACTCGCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTGCGTAAACTCACTGCAAATATCAAAAATACCAACTGTTTAGTGGTCTTTATTAACCAAATCCGTATGA
AAATTGGCGTAATGTTTGGTAATCCAGAAACGACAACAGGCGGTAATGCATTGAAATTCTATGCCTCTGTTCGTTTAGAT
ATTCGTCGTTGCGGTGTAGTCAAAGATGGCGATGAAATTATTGGTAGTGAAACCAAAGTAAAAGTGGTGAAAAACAAAGT
TGCACCGCCATTCCGTGAAGTACAATTTGATATTATGTACGGCGAAGGAATTTCTCGTATGAACGAACTACTGATTTTAG
CTGAAGCAAACGGCTTTATTAAGAAATCAGGGGCGTGGTTCTCTTATGATGGAACGAAAATTGGACAAGGTAAAAATAAT
GCAGTGAAATGGTTAAAAGAGAACCCTGAAATTGCAGATAAACTCGAACAAGAAATCCGAAATACACTGGCTTCAAACCC
AAATAGCCTATTAAAAGTAACGGCAAGCGACAGTATCGACGAGAGCGATGTCGAAGAGTTTAACGAAGAAGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I5WMI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

97.581

100

0.976
  recA Pseudomonas stutzeri DSM 10701

71.345

91.935

0.656
  recA Vibrio cholerae strain A1552

69.231

94.355

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

94.355

0.653
  recA Acinetobacter baylyi ADP1

69.298

91.935

0.637
  recA Acinetobacter baumannii D1279779

71.605

87.097

0.624
  recA Neisseria gonorrhoeae MS11

71.118

86.559

0.616
  recA Neisseria gonorrhoeae MS11

71.118

86.559

0.616
  recA Neisseria gonorrhoeae strain FA1090

71.118

86.559

0.616
  recA Ralstonia pseudosolanacearum GMI1000

68.389

88.441

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

89.247

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

87.634

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

86.828

0.554
  recA Streptococcus mitis NCTC 12261

60.588

91.398

0.554
  recA Streptococcus pneumoniae R6

60.058

92.204

0.554
  recA Streptococcus pneumoniae Rx1

60.058

92.204

0.554
  recA Streptococcus pneumoniae D39

60.058

92.204

0.554
  recA Streptococcus pneumoniae TIGR4

60.058

92.204

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

62.121

88.71

0.551
  recA Streptococcus mutans UA159

60

91.398

0.548
  recA Streptococcus mitis SK321

60

91.398

0.548
  recA Streptococcus pyogenes NZ131

59.118

91.398

0.54
  recA Helicobacter pylori 26695

61.28

88.172

0.54
  recA Helicobacter pylori strain NCTC11637

60.976

88.172

0.538
  recA Lactococcus lactis subsp. cremoris KW2

56.977

92.473

0.527
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

86.29

0.519

Multiple sequence alignment