Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A5T63_RS05155 Genome accession   NZ_CP024273
Coordinates   1012544..1013173 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain F9792     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1007544..1018173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5T63_RS05130 ycbZ 1007932..1009692 (-) 1761 WP_001612759.1 Lon protease family protein -
  A5T63_RS05135 matP 1009878..1010330 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A5T63_RS05140 ompA 1010407..1011459 (-) 1053 WP_001307702.1 porin OmpA -
  A5T63_RS05150 sulA 1011816..1012325 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  A5T63_RS05155 sxy/tfoX 1012544..1013173 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A5T63_RS05160 yccS 1013136..1015298 (-) 2163 WP_000323868.1 YccS family putative transporter -
  A5T63_RS05165 yccF 1015308..1015754 (-) 447 WP_001261235.1 YccF domain-containing protein -
  A5T63_RS05170 helD 1015877..1017931 (+) 2055 WP_001612761.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=253254 A5T63_RS05155 WP_001612760.1 1012544..1013173(+) (sxy/tfoX) [Escherichia coli strain F9792]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253254 A5T63_RS05155 WP_001612760.1 1012544..1013173(+) (sxy/tfoX) [Escherichia coli strain F9792]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment