Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | CYA_RS12805 | Genome accession | NC_007775 |
| Coordinates | 2754125..2754511 (+) | Length | 128 a.a. |
| NCBI ID | WP_011431513.1 | Uniprot ID | A0A2G8PF49 |
| Organism | Synechococcus sp. JA-3-3Ab | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2749125..2759511
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYA_RS12785 (CYA_2734) | - | 2750055..2750906 (+) | 852 | WP_011431509.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| CYA_RS12790 (CYA_2735) | - | 2751044..2752162 (+) | 1119 | WP_011431510.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| CYA_RS12795 (CYA_2736) | - | 2752181..2752465 (-) | 285 | WP_011431511.1 | YggT family protein | - |
| CYA_RS12800 (CYA_2737) | - | 2752755..2753897 (+) | 1143 | WP_011431512.1 | response regulator | - |
| CYA_RS12805 (CYA_2738) | pilH | 2754125..2754511 (+) | 387 | WP_011431513.1 | response regulator | Machinery gene |
| CYA_RS12810 (CYA_2739) | pilH | 2754508..2754873 (+) | 366 | WP_011431514.1 | response regulator transcription factor | Machinery gene |
| CYA_RS12815 (CYA_2740) | - | 2754985..2755503 (+) | 519 | WP_041438647.1 | chemotaxis protein CheW | - |
| CYA_RS12820 (CYA_2741) | - | 2755812..2758262 (+) | 2451 | WP_011431516.1 | methyl-accepting chemotaxis protein | - |
Sequence
Protein
Download Length: 128 a.a. Molecular weight: 14530.74 Da Isoelectric Point: 4.9929
>NTDB_id=25325 CYA_RS12805 WP_011431513.1 2754125..2754511(+) (pilH) [Synechococcus sp. JA-3-3Ab]
MSKVLVVDDNRTYLEAISSLLSESGLEVSTAMDGVEAMDIIRQQKPDVVVLDIVMPGMNGYEVCREVKKDESTKHIRIVV
CSTKDQVFDIEWAKRNQADAYVTKPFKPQELLATIKQQLREIKETSQK
MSKVLVVDDNRTYLEAISSLLSESGLEVSTAMDGVEAMDIIRQQKPDVVVLDIVMPGMNGYEVCREVKKDESTKHIRIVV
CSTKDQVFDIEWAKRNQADAYVTKPFKPQELLATIKQQLREIKETSQK
Nucleotide
Download Length: 387 bp
>NTDB_id=25325 CYA_RS12805 WP_011431513.1 2754125..2754511(+) (pilH) [Synechococcus sp. JA-3-3Ab]
ATGAGCAAAGTACTGGTGGTGGATGATAACCGTACCTATCTGGAGGCCATTTCCAGCCTGCTCTCCGAGAGCGGGTTGGA
AGTCTCCACAGCCATGGACGGTGTGGAGGCGATGGACATCATTCGTCAGCAGAAGCCTGACGTGGTGGTGCTGGACATCG
TCATGCCTGGCATGAACGGCTACGAAGTGTGCCGGGAAGTGAAGAAAGATGAAAGCACCAAGCACATCCGCATCGTCGTG
TGTTCCACCAAAGATCAAGTCTTTGATATCGAGTGGGCCAAGCGCAATCAAGCCGATGCCTATGTAACCAAACCTTTCAA
GCCTCAAGAGCTATTGGCTACTATCAAACAGCAGTTGCGGGAGATCAAGGAGACCAGCCAAAAATGA
ATGAGCAAAGTACTGGTGGTGGATGATAACCGTACCTATCTGGAGGCCATTTCCAGCCTGCTCTCCGAGAGCGGGTTGGA
AGTCTCCACAGCCATGGACGGTGTGGAGGCGATGGACATCATTCGTCAGCAGAAGCCTGACGTGGTGGTGCTGGACATCG
TCATGCCTGGCATGAACGGCTACGAAGTGTGCCGGGAAGTGAAGAAAGATGAAAGCACCAAGCACATCCGCATCGTCGTG
TGTTCCACCAAAGATCAAGTCTTTGATATCGAGTGGGCCAAGCGCAATCAAGCCGATGCCTATGTAACCAAACCTTTCAA
GCCTCAAGAGCTATTGGCTACTATCAAACAGCAGTTGCGGGAGATCAAGGAGACCAGCCAAAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
51.667 |
93.75 |
0.484 |
| vicR | Streptococcus mutans UA159 |
40 |
93.75 |
0.375 |