Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   DFS94_RS11620 Genome accession   NZ_CP029420
Coordinates   2317233..2317892 (+) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain 3385     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2312233..2322892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFS94_RS11605 (DFS94_12110) ygiS 2314438..2316045 (-) 1608 WP_001296417.1 ABC transporter substrate-binding protein -
  DFS94_RS11610 (DFS94_12115) ygiV 2316154..2316636 (-) 483 WP_000183485.1 GyrI-like domain-containing protein -
  DFS94_RS11615 (DFS94_12120) ygiW 2316689..2317081 (-) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  DFS94_RS11620 (DFS94_12125) ciaR 2317233..2317892 (+) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  DFS94_RS11625 (DFS94_12130) qseC 2317889..2319238 (+) 1350 WP_000673383.1 quorum sensing histidine kinase QseC -
  DFS94_RS11630 (DFS94_12135) ygiZ 2319284..2319616 (-) 333 WP_000914696.1 DUF2645 family protein -
  DFS94_RS25965 - 2319623..2320333 (-) 711 WP_000834026.1 hypothetical protein -
  DFS94_RS25970 - 2320336..2320815 (-) 480 WP_000069057.1 Hcp family type VI secretion system effector -
  DFS94_RS11640 (DFS94_12145) mdaB 2321066..2321647 (+) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  DFS94_RS11645 (DFS94_12150) ygiN 2321678..2321992 (+) 315 WP_000633738.1 putative quinol monooxygenase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=253249 DFS94_RS11620 WP_001221493.1 2317233..2317892(+) (ciaR) [Escherichia coli strain 3385]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=253249 DFS94_RS11620 WP_001221493.1 2317233..2317892(+) (ciaR) [Escherichia coli strain 3385]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCTGTATTGATCCTGACTGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365