Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DF184_RS05175 Genome accession   NZ_CP029398
Coordinates   1019352..1020050 (-) Length   232 a.a.
NCBI ID   WP_109371421.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014352..1025050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS05155 (DF184_05155) - 1015278..1015637 (+) 360 WP_002935059.1 SAG1252 family conjugative relaxosome accessory protein -
  DF184_RS05160 (DF184_05160) - 1015647..1016012 (+) 366 WP_018163914.1 plasmid mobilization relaxosome protein MobC -
  DF184_RS05165 (DF184_05165) - 1015999..1017858 (+) 1860 WP_024394872.1 SAG1250 family conjugative relaxase -
  DF184_RS05170 (DF184_05170) - 1017981..1019336 (-) 1356 WP_002935054.1 HAMP domain-containing sensor histidine kinase -
  DF184_RS05175 (DF184_05175) scnR 1019352..1020050 (-) 699 WP_109371421.1 response regulator transcription factor Regulator
  DF184_RS05180 (DF184_05180) - 1020405..1020560 (+) 156 WP_002935049.1 lacticin 481 family lantibiotic -
  DF184_RS05185 (DF184_05185) - 1020589..1020744 (+) 156 WP_002935048.1 lacticin 481 family lantibiotic -
  DF184_RS05190 (DF184_05190) - 1021283..1021450 (+) 168 WP_074391117.1 lacticin 481 family lantibiotic -
  DF184_RS05195 (DF184_05195) - 1021469..1024249 (+) 2781 WP_024394871.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26312.50 Da        Isoelectric Point: 5.1495

>NTDB_id=253167 DF184_RS05175 WP_109371421.1 1019352..1020050(-) (scnR) [Streptococcus suis strain HN105]
MGFEIQLLNKHILIVDDDIALSESIKEVLMSRGFKNISFAYSISEGIDIFSVSQIDLIILDVMLPDGEGYLLSKYVRKTS
DVPILFLTAKNNPDDEINGLDSGGDDYVTKPFLPKSLTYRIMALLRRAYRDESELIELTDCTIDLNNASVKKSNQNFSLT
PTEIQILRKLFINKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIEIIPSKPKHLITVKGLGYKLAI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=253167 DF184_RS05175 WP_109371421.1 1019352..1020050(-) (scnR) [Streptococcus suis strain HN105]
ATGGGTTTTGAAATACAATTGTTGAATAAACATATACTAATTGTGGATGATGACATCGCATTAAGCGAATCAATCAAAGA
AGTGCTCATGAGTCGTGGCTTCAAAAATATTAGTTTTGCTTATAGTATTAGCGAAGGTATTGATATTTTTTCAGTATCTC
AAATTGATTTAATTATTCTAGATGTCATGTTACCAGATGGTGAAGGCTATTTACTTTCCAAATATGTAAGAAAGACATCT
GATGTCCCAATTCTATTCTTAACTGCTAAAAATAATCCTGATGATGAAATAAATGGGCTTGACTCAGGAGGAGATGACTA
TGTTACAAAGCCATTTTTACCTAAATCTTTAACTTACCGTATAATGGCATTGTTGAGAAGAGCTTACCGAGATGAATCTG
AACTCATTGAATTAACAGATTGCACAATTGACTTGAATAATGCAAGCGTAAAAAAAAGTAATCAAAATTTTTCACTGACC
CCTACTGAAATTCAAATTCTTAGAAAGCTATTTATCAACAAAAATTACATCGTTTCCACAGAGACAATATGTGATACTAT
TTGGGGATTAGATAGCTTTGGATATGAAAAATCCTTAATGGTCCATATACGCAATATTCGAGAAAAAATCGAAATTATAC
CTTCCAAGCCAAAGCATCTAATTACCGTTAAAGGGCTTGGATATAAACTTGCTATTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.152

96.121

0.405
  vicR Streptococcus mutans UA159

37.991

98.707

0.375
  micA Streptococcus pneumoniae Cp1015

37.719

98.276

0.371