Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ADEH_RS19670 Genome accession   NC_007760
Coordinates   4371299..4371790 (+) Length   163 a.a.
NCBI ID   WP_011422856.1    Uniprot ID   Q2IG69
Organism   Anaeromyxobacter dehalogenans 2CP-C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4366299..4376790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADEH_RS19650 (Adeh_3804) - 4367130..4367738 (-) 609 WP_011422852.1 HAMP domain-containing histidine kinase -
  ADEH_RS19655 (Adeh_3805) - 4367853..4368335 (-) 483 WP_011422853.1 methyltransferase family protein -
  ADEH_RS19660 (Adeh_3806) - 4368379..4368861 (-) 483 WP_049760138.1 Fur family transcriptional regulator -
  ADEH_RS19665 (Adeh_3807) dacB 4368995..4371196 (+) 2202 WP_232287346.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  ADEH_RS19670 (Adeh_3808) ssb 4371299..4371790 (+) 492 WP_011422856.1 single-stranded DNA-binding protein Machinery gene
  ADEH_RS19675 (Adeh_3809) - 4371940..4372719 (+) 780 WP_011422857.1 DUF4253 domain-containing protein -
  ADEH_RS19680 (Adeh_3810) - 4372909..4375818 (+) 2910 WP_011422858.1 tetratricopeptide repeat protein -
  ADEH_RS19685 (Adeh_3811) - 4375844..4376524 (+) 681 WP_011422859.1 haloacid dehalogenase type II -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17033.67 Da        Isoelectric Point: 6.4816

>NTDB_id=25303 ADEH_RS19670 WP_011422856.1 4371299..4371790(+) (ssb) [Anaeromyxobacter dehalogenans 2CP-C]
MVNRVILVGNLGKDPEVRYTSGGQAVANLRIATSRSWTDKQSGQRKEETEWHDVEVWGKQAEQCGEYLAKGRQVYVEGRL
KTDKWQDKQSGQERSKVKVVAETVRFLGGGAGGGAGRGAGGPGRQHGPDDAPPGGFEEPDSGPGPGFGSGGGAGGGGPDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=25303 ADEH_RS19670 WP_011422856.1 4371299..4371790(+) (ssb) [Anaeromyxobacter dehalogenans 2CP-C]
ATGGTGAACAGGGTCATCCTCGTCGGGAACCTCGGGAAGGATCCGGAGGTCCGGTACACGTCCGGCGGCCAGGCGGTCGC
GAACCTCCGCATCGCCACCTCCCGCTCCTGGACCGACAAGCAGTCCGGGCAGCGCAAGGAGGAGACGGAGTGGCACGACG
TCGAGGTCTGGGGGAAGCAGGCCGAGCAGTGCGGTGAGTACCTGGCGAAGGGCCGCCAGGTCTACGTCGAGGGCCGCCTC
AAGACCGACAAGTGGCAGGACAAGCAGTCCGGCCAGGAGCGGTCGAAGGTGAAGGTGGTCGCCGAGACCGTCCGCTTCCT
CGGCGGCGGCGCTGGCGGCGGCGCCGGGCGCGGCGCCGGCGGCCCCGGCCGCCAGCACGGCCCCGACGACGCCCCTCCGG
GCGGCTTCGAGGAGCCGGATTCCGGCCCTGGCCCCGGCTTCGGTTCGGGGGGCGGCGCGGGCGGCGGTGGGCCGGACGAC
ATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2IG69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.055

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

38.068

100

0.411
  ssb Glaesserella parasuis strain SC1401

48.819

77.914

0.38

Multiple sequence alignment