Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CSE15_RS11505 Genome accession   NZ_CP024204
Coordinates   2219947..2220240 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain P-10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2214947..2225240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE15_RS11455 (CSE15_11495) sinR 2215110..2215445 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  CSE15_RS11460 (CSE15_11500) tasA 2215513..2216313 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  CSE15_RS11465 (CSE15_11505) sipW 2216372..2216944 (-) 573 WP_017357979.1 signal peptidase I SipW -
  CSE15_RS11470 (CSE15_11510) tapA 2216995..2217522 (-) 528 WP_099496603.1 amyloid fiber anchoring/assembly protein TapA -
  CSE15_RS11475 (CSE15_11515) - 2217775..2218101 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  CSE15_RS11480 (CSE15_11520) - 2218136..2218330 (-) 195 WP_008342191.1 YqzE family protein -
  CSE15_RS11485 (CSE15_11525) - 2218391..2218774 (-) 384 WP_041091746.1 competence type IV pilus minor pilin ComGG -
  CSE15_RS11490 (CSE15_11530) comGF 2218771..2219268 (-) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  CSE15_RS11495 (CSE15_11535) comGE 2219210..2219524 (-) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  CSE15_RS11500 (CSE15_11540) comGD 2219508..2219954 (-) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  CSE15_RS11505 (CSE15_11545) comGC 2219947..2220240 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  CSE15_RS11510 (CSE15_11550) comGB 2220257..2221297 (-) 1041 WP_017357986.1 competence type IV pilus assembly protein ComGB -
  CSE15_RS11515 (CSE15_11555) comGA 2221278..2222348 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  CSE15_RS11520 (CSE15_11560) - 2222814..2223683 (-) 870 WP_007501231.1 STAS domain-containing protein -
  CSE15_RS11530 (CSE15_11570) - 2223909..2224289 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CSE15_RS11535 (CSE15_11575) - 2224502..2224744 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=252976 CSE15_RS11505 WP_008342186.1 2219947..2220240(-) (comGC) [Bacillus altitudinis strain P-10]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=252976 CSE15_RS11505 WP_008342186.1 2219947..2220240(-) (comGC) [Bacillus altitudinis strain P-10]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTTATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment