Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   CS376_RS19425 Genome accession   NZ_CP024203
Coordinates   3837671..3837790 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3832671..3842790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS19400 - 3833023..3833528 (+) 506 Protein_3758 bacteriocin biosynthesis protein AlbG -
  CS376_RS19405 - 3833540..3834916 (-) 1377 WP_099567168.1 YncE family protein -
  CS376_RS19410 - 3834956..3836311 (-) 1356 WP_015240776.1 YncE family protein -
  CS376_RS19420 rapF 3836542..3837687 (+) 1146 WP_015240777.1 tetratricopeptide repeat protein Regulator
  CS376_RS19425 phrF 3837671..3837790 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  CS376_RS19430 - 3837988..3838191 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  CS376_RS19435 - 3838205..3838408 (+) 204 WP_099567169.1 hypothetical protein -
  CS376_RS19440 - 3838443..3838628 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  CS376_RS19445 - 3838814..3839095 (+) 282 WP_007407643.1 hypothetical protein -
  CS376_RS19450 - 3839139..3839651 (+) 513 WP_099567170.1 stage II sporulation protein M -
  CS376_RS19460 - 3840242..3840460 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  CS376_RS19465 speB 3840628..3841500 (-) 873 WP_007614448.1 agmatinase -
  CS376_RS19470 speE 3841559..3842389 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=252938 CS376_RS19425 WP_015240778.1 3837671..3837790(+) (phrF) [Bacillus velezensis strain NKG-1]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=252938 CS376_RS19425 WP_015240778.1 3837671..3837790(+) (phrF) [Bacillus velezensis strain NKG-1]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment