Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CS376_RS18470 Genome accession   NZ_CP024203
Coordinates   3651663..3652352 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain NKG-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3646663..3657352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS18435 - 3646860..3647342 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CS376_RS18440 flgM 3647357..3647623 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CS376_RS18445 - 3647693..3648112 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  CS376_RS18450 comFC 3648186..3648875 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  CS376_RS18455 - 3648881..3649165 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  CS376_RS18460 comFA 3649223..3650608 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  CS376_RS18465 - 3650717..3651565 (-) 849 WP_003151387.1 DegV family protein -
  CS376_RS18470 degU 3651663..3652352 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CS376_RS18475 degS 3652429..3653592 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CS376_RS18480 - 3653815..3654462 (+) 648 WP_076424607.1 YigZ family protein -
  CS376_RS18485 - 3654467..3655687 (+) 1221 WP_012118574.1 LCP family protein -
  CS376_RS18490 - 3655786..3656862 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=252932 CS376_RS18470 WP_003219701.1 3651663..3652352(-) (degU) [Bacillus velezensis strain NKG-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=252932 CS376_RS18470 WP_003219701.1 3651663..3652352(-) (degU) [Bacillus velezensis strain NKG-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment