Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CS376_RS18450 Genome accession   NZ_CP024203
Coordinates   3648186..3648875 (-) Length   229 a.a.
NCBI ID   WP_217898730.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3643186..3653875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS18415 fliW 3643277..3643708 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  CS376_RS18420 - 3643738..3644307 (-) 570 WP_043020595.1 DUF6470 family protein -
  CS376_RS18425 flgL 3644398..3645315 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  CS376_RS18430 flgK 3645327..3646844 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  CS376_RS18435 - 3646860..3647342 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CS376_RS18440 flgM 3647357..3647623 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CS376_RS18445 - 3647693..3648112 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  CS376_RS18450 comFC 3648186..3648875 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  CS376_RS18455 - 3648881..3649165 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  CS376_RS18460 comFA 3649223..3650608 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  CS376_RS18465 - 3650717..3651565 (-) 849 WP_003151387.1 DegV family protein -
  CS376_RS18470 degU 3651663..3652352 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CS376_RS18475 degS 3652429..3653592 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25271.92 Da        Isoelectric Point: 8.2927

>NTDB_id=252930 CS376_RS18450 WP_217898730.1 3648186..3648875(-) (comFC) [Bacillus velezensis strain NKG-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=252930 CS376_RS18450 WP_217898730.1 3648186..3648875(-) (comFC) [Bacillus velezensis strain NKG-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment