Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DIW83_RS05115 Genome accession   NZ_CP029351
Coordinates   1017676..1019697 (+) Length   673 a.a.
NCBI ID   WP_016804922.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain NCTC 8102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012676..1024697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIW83_RS05090 (DIW83_05090) - 1013013..1013423 (+) 411 WP_016804926.1 GFA family protein -
  DIW83_RS05095 (DIW83_05095) - 1013471..1014706 (-) 1236 WP_016804925.1 pyridoxal phosphate-dependent aminotransferase -
  DIW83_RS05100 (DIW83_05100) - 1014915..1015094 (+) 180 WP_002118942.1 hypothetical protein -
  DIW83_RS05105 (DIW83_05105) - 1015126..1016562 (-) 1437 WP_016804924.1 diguanylate cyclase domain-containing protein -
  DIW83_RS05110 (DIW83_05110) - 1016706..1017497 (-) 792 WP_016804923.1 hypothetical protein -
  DIW83_RS05115 (DIW83_05115) uvrB 1017676..1019697 (+) 2022 WP_016804922.1 excinuclease ABC subunit UvrB Machinery gene
  DIW83_RS05120 (DIW83_05120) - 1019791..1020378 (+) 588 WP_016804921.1 lipocalin family protein -
  DIW83_RS05125 (DIW83_05125) rarD 1020487..1021434 (+) 948 WP_080593573.1 EamA family transporter RarD -
  DIW83_RS05130 (DIW83_05130) - 1021651..1023108 (+) 1458 WP_016804919.1 glyceraldehyde-3-phosphate dehydrogenase -
  DIW83_RS05135 (DIW83_05135) - 1023258..1023992 (+) 735 WP_004885863.1 hypothetical protein -
  DIW83_RS05140 (DIW83_05140) - 1024004..1024678 (+) 675 WP_002052875.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77232.04 Da        Isoelectric Point: 5.3351

>NTDB_id=252912 DIW83_RS05115 WP_016804922.1 1017676..1019697(+) (uvrB) [Acinetobacter nosocomialis strain NCTC 8102]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGVEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPDDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAK
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLHSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADRITD
SMQKAIDETERRRAKQIEFNELHGITPRSAVRQVIKEIDAGEVLSDDQIDEKVLEQAQALSADDRHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=252912 DIW83_RS05115 WP_016804922.1 1017676..1019697(+) (uvrB) [Acinetobacter nosocomialis strain NCTC 8102]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCACTACCAGCCAGCGGGTGATCAGCCACAGGCAATTGAAAAGCTGGT
CAATGGTGTCGAAAAAGGTTTTCGTAATCAGTTACTGTTGGGCGTGACTGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCTCAAACCCAACGACCAACCATTGTGATGGCACACAATAAGACCTTGGCAGCCCAGCTGTATGGGGAGTTTAAA
GCCTTCTTTCCAAATAATGCAGTTGAGTACTTCGTAAGTTATTACGACTACTATCAACCAGAAGCTTATGTTCCTTCTTC
AGATACGTTTATTGAAAAAGACGCAGCAATTAATGACCATATTGACCAGATGCGTTTATCGGCAACACGTGCTTTGTTAG
AACGCCGTGATGCAATTATTGTTGCTTCTGTATCTGCTATTTATGGTTTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTGCAGGGTGACCGAGTGAGTCGAGACGAAATCATTCGTCGTTTGGTTGAAATGCAATATACGCGTAATGA
GCTTGAGTTCTTACGTGGTACCTACCGAATTCGTGGCGAAATTATTGACATTTTCCCAGCTGAATCGGATCAACATGCGA
TTCGTATTGAGCTTTTTGATGATGAAGTAGACTCAATTCGCTGGTTTGATCCACTCACCGGTAAGATGGTGCGCAAAGTA
CCACGTGTTACGATTTATCCAAAAAGTCATTATGTAACGCCGAAAGACAACTTAACGCGTGCTATTGATACTATTAAGGA
TGAACTTCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTTGAAGCTCAGCGTATCGAACAGCGTACTCGTT
ATGATTTAGAAATGATGCAGCAGTTAGGTTATACCAATGGTATTGAAAACTACTCTCGTCATTTATCAGGCCGTCCAGCA
GGTGAAGCACCACCAACATTATTTGATTATGTACCGGACGATGCTTTACTTATTATTGATGAATCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCACGTAAAGAAAACTTAGTGAATTATGGTTTCCGTTTACCAAGTGCGC
TTGATAATCGCCCTATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATATTTGTGAGCGCAACGCCCGCTAAA
TACGAATTGGAAAAGTCAGAACAAGTGGTTGAGCAAGTTGTTCGTCCAACAGGTTTGATTGATCCAGAAATTGAAGTTCG
CCCAGTACTTACACAAGTCGATGATGTACTTTCTGAAATTAATATTCGTAAGAATTTAAATGAACGTGTGTTGGTGACCA
CTTTAACTAAACGTATGGCGGAAGATTTAACGTCTTACTTGAAAGAATATGGCGTTAAGGTTGCTTATTTGCACTCAGAT
ATCGATACCGTTGAGCGTGTCAAAATTATTCATGAGTTACGTACAGGTGTATTCGACGTTTTAGTCGGTATTAACTTGCT
TCGTGAAGGTCTCGACATGCCAGAGGTTTCTTTAGTTGCCATTTTAGATGCAGATAAAGAGGGTTTCTTGCGTTCAGAAC
GTTCGCTGATTCAGACCATTGGTCGAGCTGCCCGAAATGTGAAAGGTAAAGCAATTTTATATGCGGATAGAATTACCGAT
TCTATGCAAAAAGCAATTGATGAAACCGAGCGCCGTAGAGCCAAACAAATTGAGTTCAATGAACTACATGGTATTACACC
TCGTAGTGCTGTTCGTCAGGTCATCAAAGAAATTGATGCAGGTGAAGTACTTTCAGATGATCAAATTGATGAGAAGGTAT
TAGAGCAGGCACAAGCTTTAAGTGCCGATGATCGACATATTCTTTCTGATCCTAAATTGTTTAGTAAGCATATTACTAAG
CTTGAGAAAGAAATGTTAAAAGCATCTAAAGACTTACAATTTGAGCAAGCGGCACGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(161-251)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

UvrB/uvrC motif (UVR)

(638-670)

Type III restriction enzyme, res subunit (ResIII)

(17-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae R6

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae D39

57.848

99.406

0.575

Multiple sequence alignment