Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CSH50_RS07815 Genome accession   NZ_CP024159
Coordinates   1694217..1696433 (+) Length   738 a.a.
NCBI ID   WP_096048371.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain PtA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689217..1701433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSH50_RS07785 - 1690077..1690316 (-) 240 WP_028690971.1 DUF3077 domain-containing protein -
  CSH50_RS07790 - 1690313..1690552 (-) 240 WP_096048373.1 hypothetical protein -
  CSH50_RS07795 - 1691083..1691706 (+) 624 WP_096048372.1 glutathione S-transferase -
  CSH50_RS07800 - 1691839..1692771 (+) 933 WP_062573273.1 ABC transporter ATP-binding protein -
  CSH50_RS07805 - 1692768..1693547 (+) 780 WP_028690974.1 ABC transporter permease -
  CSH50_RS07810 - 1693431..1694072 (-) 642 WP_157763493.1 DUF2062 domain-containing protein -
  CSH50_RS07815 comA 1694217..1696433 (+) 2217 WP_096048371.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CSH50_RS07820 exbB 1696585..1697220 (+) 636 WP_084942595.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CSH50_RS07825 - 1697217..1697651 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  CSH50_RS07830 lpxK 1697651..1698655 (+) 1005 WP_062573277.1 tetraacyldisaccharide 4'-kinase -
  CSH50_RS07835 - 1698690..1698875 (+) 186 WP_011532874.1 Trm112 family protein -
  CSH50_RS07840 kdsB 1698872..1699636 (+) 765 WP_096048370.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CSH50_RS07845 - 1699636..1700100 (+) 465 WP_062573279.1 low molecular weight protein-tyrosine-phosphatase -
  CSH50_RS07850 murB 1700097..1701116 (+) 1020 WP_062573280.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79786.38 Da        Isoelectric Point: 10.9399

>NTDB_id=252570 CSH50_RS07815 WP_096048371.1 1694217..1696433(+) (comA) [Pseudomonas mosselii strain PtA1]
MRTGMLALVLGLLSLRFLPALPPVGWLIPLLLLAVASLRTRAWPLGWLALGVCWACWSAQQALDDRLPAALDGRTLWLEG
RVVGLPTRTERGVRFELEQPQSRRARLPQRVQLSWFEGPPLRAGEHWRLAVNVRRPQGLLNPHGPDQEATLLARRVGATG
TVKAGTRQGEEASSWRDGLRQRLLATDAHGREAALAALVLGDGAGLAREDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARLGAWPRWLPWVPWACGLAMAAALAYGWLAGFGVPVQRACLMLAVVLFWRLRFRHLGAWVPLLMALSGVLLVEPL
ASLLPGFWLSFGAVAVLVLCFAARLGAWRPWQAWTRGQWVIAVGLLPVLLALGLPVSLSAPLANLLAVPWLSLGVLPLAL
LGTALLPVPGLGEVMLWLAGLSLDGLFAVLTRLAGLQPAWIPESLPLWAWLLVCLGAVLVLLPRGVPLRAPGAVMLLALW
APREQVPPGQVEVWQLDVGQGLAVLLRTRNHALLYDAGPAQGGRDLGETVVLPTLRKLGVKALDVMLISHGHADHAGGAA
AVRRGVPVARVLAGEVAGLEAASLCRSGERWQWDGVDFELWHWPQGASSNERSCVLRVQANGERLLLAGDMEAGAERAWL
AATDDPRVDWLQAPHHGSRTSSSEPFVQATAPRAVLISRGRHNGFGHPHGQVVERYRRHGVVVHDTAVEGALRLVLGSRG
GVEGVRRERRFWREVDEG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=252570 CSH50_RS07815 WP_096048371.1 1694217..1696433(+) (comA) [Pseudomonas mosselii strain PtA1]
ATGCGCACAGGGATGCTGGCGCTGGTCCTCGGGCTGCTGAGCCTGCGTTTTCTACCTGCCCTGCCACCGGTCGGATGGCT
GATTCCATTGCTCTTGCTGGCCGTTGCCAGCCTGCGTACCCGGGCCTGGCCGTTGGGTTGGTTGGCGCTGGGTGTGTGCT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTGGACGACCGCCTGCCTGCCGCGCTGGATGGCCGCACGCTGTGGCTGGAGGGG
CGGGTGGTCGGCCTGCCGACCCGTACCGAGCGCGGCGTGCGTTTCGAGCTGGAGCAGCCGCAGTCACGCCGGGCCCGGTT
GCCGCAGCGGGTGCAATTGAGCTGGTTCGAGGGGCCGCCGCTGCGAGCGGGGGAGCACTGGCGGCTGGCGGTCAACGTGC
GTCGGCCGCAGGGCCTGCTCAACCCCCATGGCCCGGATCAGGAGGCCACGCTGTTGGCGCGGCGGGTCGGTGCCACCGGC
ACGGTCAAGGCCGGTACGCGCCAGGGCGAGGAGGCCAGCAGTTGGCGCGACGGCCTGCGCCAGCGCCTGCTGGCCACCGA
TGCCCATGGCCGGGAGGCGGCGTTGGCCGCCCTGGTGCTCGGGGATGGCGCAGGCCTGGCGCGGGAGGACTGGCAGGTGC
TGCAGGCCACCGGCACGGTACACCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCCGGATTGGTCTACGGGCTG
GTGGCGGGGCTGGCGCGCCTGGGGGCCTGGCCCCGGTGGTTGCCGTGGGTGCCCTGGGCCTGTGGCCTGGCGATGGCGGC
GGCATTGGCCTACGGCTGGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGGGCGTGCCTGATGCTGGCTGTGGTGCTGTTCT
GGCGCTTGCGCTTTCGCCATCTGGGCGCCTGGGTGCCGTTGCTGATGGCGCTGTCGGGCGTGCTGCTGGTCGAGCCGCTG
GCCAGCCTGTTGCCGGGGTTCTGGCTGTCGTTCGGTGCGGTGGCGGTGCTGGTGCTGTGTTTTGCCGCCCGGCTGGGCGC
CTGGCGGCCCTGGCAGGCCTGGACCCGCGGCCAGTGGGTGATCGCCGTGGGGTTGCTGCCGGTGCTGCTGGCCTTGGGGC
TGCCCGTCAGCCTCAGTGCGCCGCTGGCCAATCTGCTGGCCGTGCCATGGCTGAGCCTGGGTGTGCTGCCGCTGGCGTTG
CTGGGTACGGCCCTGTTGCCGGTGCCTGGGCTGGGGGAGGTGATGCTGTGGCTGGCGGGGCTGTCGTTGGATGGGCTGTT
TGCCGTGTTGACGCGATTGGCAGGGCTGCAGCCTGCCTGGATACCTGAGTCACTGCCCTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTGCCGTGCTGGTGTTGCTGCCCCGGGGCGTGCCGTTGCGGGCGCCGGGCGCGGTCATGCTGCTGGCGCTGTGG
GCACCACGCGAGCAGGTGCCTCCGGGGCAAGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGGCGGTGTTGCTGCG
CACCCGCAATCACGCCTTGCTGTATGACGCAGGTCCGGCCCAGGGTGGCAGGGACCTGGGCGAGACGGTAGTGCTGCCGA
CCTTGCGCAAGCTTGGTGTGAAGGCGCTGGATGTGATGCTGATCAGCCATGGCCATGCCGACCATGCCGGTGGGGCGGCG
GCGGTGCGGCGTGGGGTGCCGGTGGCGCGGGTGCTGGCCGGCGAGGTTGCCGGGCTGGAAGCGGCCTCGCTGTGCCGCAG
TGGCGAGCGCTGGCAGTGGGATGGCGTCGATTTCGAGCTCTGGCACTGGCCGCAGGGGGCTTCCAGCAACGAGCGTTCCT
GTGTGTTGCGGGTGCAGGCCAATGGCGAGCGCTTGCTGCTGGCCGGGGACATGGAGGCCGGCGCGGAGCGTGCGTGGCTG
GCTGCGACCGACGATCCTCGGGTGGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCACGTCGTCCAGCGAGCCGTTCGT
CCAGGCCACGGCACCGCGCGCGGTGCTGATTTCCCGGGGGCGGCACAATGGTTTCGGGCATCCCCATGGGCAGGTGGTCG
AGCGCTATCGCCGGCACGGGGTGGTGGTGCATGACACGGCGGTGGAGGGGGCGTTGCGGTTGGTGCTGGGGAGTCGGGGT
GGGGTGGAAGGTGTGCGCAGGGAGCGGCGGTTCTGGCGTGAGGTTGACGAGGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.971

97.425

0.575
  comA Ralstonia pseudosolanacearum GMI1000

36.009

100

0.413

Multiple sequence alignment