Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CSH50_RS07820 Genome accession   NZ_CP024159
Coordinates   1696585..1697220 (+) Length   211 a.a.
NCBI ID   WP_084942595.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain PtA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1691585..1702220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSH50_RS07800 - 1691839..1692771 (+) 933 WP_062573273.1 ABC transporter ATP-binding protein -
  CSH50_RS07805 - 1692768..1693547 (+) 780 WP_028690974.1 ABC transporter permease -
  CSH50_RS07810 - 1693431..1694072 (-) 642 WP_157763493.1 DUF2062 domain-containing protein -
  CSH50_RS07815 comA 1694217..1696433 (+) 2217 WP_096048371.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CSH50_RS07820 exbB 1696585..1697220 (+) 636 WP_084942595.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CSH50_RS07825 - 1697217..1697651 (+) 435 WP_028690977.1 biopolymer transporter ExbD -
  CSH50_RS07830 lpxK 1697651..1698655 (+) 1005 WP_062573277.1 tetraacyldisaccharide 4'-kinase -
  CSH50_RS07835 - 1698690..1698875 (+) 186 WP_011532874.1 Trm112 family protein -
  CSH50_RS07840 kdsB 1698872..1699636 (+) 765 WP_096048370.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CSH50_RS07845 - 1699636..1700100 (+) 465 WP_062573279.1 low molecular weight protein-tyrosine-phosphatase -
  CSH50_RS07850 murB 1700097..1701116 (+) 1020 WP_062573280.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.17 Da        Isoelectric Point: 7.3616

>NTDB_id=252571 CSH50_RS07820 WP_084942595.1 1696585..1697220(+) (exbB) [Pseudomonas mosselii strain PtA1]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=252571 CSH50_RS07820 WP_084942595.1 1696585..1697220(+) (exbB) [Pseudomonas mosselii strain PtA1]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCTCGGGTCATCCACGAGTTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment