Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   DG474_RS08150 Genome accession   NZ_CP029257
Coordinates   1693013..1694980 (-) Length   655 a.a.
NCBI ID   WP_000837392.1    Uniprot ID   A0ABU5G0I5
Organism   Streptococcus oralis strain CCUG 53468     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688013..1699980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS08135 (DG474_08265) cps4B 1688533..1689264 (-) 732 WP_255778043.1 capsular polysaccharide biosynthesis protein Cps4B -
  DG474_RS08140 (DG474_08270) - 1689266..1690711 (-) 1446 WP_255778044.1 LCP family protein -
  DG474_RS08145 (DG474_08275) amiA3 1690903..1692864 (-) 1962 WP_255778045.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS08150 (DG474_08280) amiA 1693013..1694980 (-) 1968 WP_000837392.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS08155 (DG474_08285) - 1695696..1696085 (+) 390 Protein_1556 IS3 family transposase -
  DG474_RS08160 (DG474_08290) - 1696146..1697756 (-) 1611 WP_255778046.1 alpha-glucosidase -
  DG474_RS08165 (DG474_08295) - 1697909..1699393 (+) 1485 WP_255778047.1 DUF1846 domain-containing protein -
  DG474_RS08170 (DG474_08300) - 1699485..1699967 (+) 483 WP_000032556.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72439.92 Da        Isoelectric Point: 5.0129

>NTDB_id=252557 DG474_RS08150 WP_000837392.1 1693013..1694980(-) (amiA) [Streptococcus oralis strain CCUG 53468]
MKSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYAEVKAKDFVTGLKHAADGKSDGLSLIQDSIKGLAEYVSGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKQEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGANKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTIYSPEKAKAAFAKAKEELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSIESSLGTENVIVDVLQMTDNEKI
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTAKEYEEAFKKWQQEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=252557 DG474_RS08150 WP_000837392.1 1693013..1694980(-) (amiA) [Streptococcus oralis strain CCUG 53468]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTACTGTTAACTGCTTGTGGGCAAAGTGA
AAAGAAGGCTGATGCCCCCAAGACATTCTCTTATGTCTACGCTATGGATCCATCTTCTTTGGACTATAGTGTGACGAGCA
AGAGCTCAACCTCTGACGTTATAGCAAACGTTGTTGATGGTCTTTTGGAAAATGATAAGTATGGGAACTTAATTCCATCG
CTTGCAGAAGACTGGTCTGTTTCAAAGGATGGTTTGACTTACACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGATGGAGAAGAATACGCTGAAGTTAAAGCTAAAGACTTTGTTACTGGGCTTAAACATGCTGCTGACGGAAAATCAGATG
GTCTTTCTTTGATTCAGGATTCTATCAAAGGTTTGGCAGAGTATGTTAGTGGTGAGAGCAATGATTTCTCTACTGTAGGA
GTTAAGGCTGTTGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAATTCTAAGGTTACAACTGC
TACCATGCTTCCAGTTAATGAAGAATTCTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACTCCATCGGGTATCCTAT
ATAATGGTCCTTACTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTCAAGATTGACAATATTAAACTAACTTTCTACGATGGATCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGTGCTTATACAACAGCCCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAACAAGAGTACGGCGATAAGATTG
TCTACAGTCCACAAGAAGCGACTAGCTACTACCTCACTGTTAACGTAAACCGCCAATCTTATAATAAAACAGCTAAAACA
GACGAAGCTCAAAAAACATCAACGAAAGAAGCTCTTCTCAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGATCG
TCATTCTTATACTGCTCAGTTGAATGGTGAAGAAGGTGCGAACAAGATTATCCGTAACAGCCTAGTGCCACATGACTACG
TTCAAGTGGGTGAAAAAACCTTTGGAGAGTTGGCTCAGGCAGAGCTCGTTTCATATGGAGACCAGTGGAAAGATGTAGCC
CTTACAGATGGCAAGGATACGATTTACAGTCCTGAAAAAGCTAAGGCAGCCTTTGCTAAAGCCAAGGAAGAATTGCAAGC
CAAGGGGGTTACCTTCCCAATCCATTTGGATATCCCCGTTGAACAAACAGATGTAATCGCGGTTCAACAAACCAACTCAC
TCAAGCAGTCTATCGAATCATCACTTGGTACTGAAAATGTCATTGTTGATGTCCTTCAAATGACCGATAATGAGAAAATA
AGCATTACGTCTCAAGCCAAGGTTCCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGGCCAGACTATCAAGA
CCCAGCTACCTACCTCAACATCCTTGATGCCAAGAAGGGTTCTGCCCTTAAACACTTGGGGATCACTCGCGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTTGATGAGTACAAAAAGCTCTTGGATGATGCTGCAGCTGAAACCAGCGACCTTAAC
AAGCGTTATGAAAAATATGCTAAAGCTCAAGCTTGGGTGTCTGATAGCTCACTCTTGATTCCAGTTGCTTCTTCAGGTGG
TTCTCCAACGGTTAGCCGTACTGTACCATTCACAAAAGCTTATTCTCAAGTCGGGATCAAGGGAGACCCATTTGTGTTCA
AAGGTTTGGAGTTGCAAAATGACGTTGTGACTGCAAAAGAATACGAAGAAGCCTTCAAGAAATGGCAACAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAGTAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.173

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

53.718

100

0.54