Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AYP_RS17905 Genome accession   NZ_CP024124
Coordinates   3664448..3665188 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain AYP-A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3659448..3670188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP_RS17885 (AYP_003561) aroB 3659985..3661067 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  AYP_RS17890 (AYP_003562) aroK 3661096..3661665 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AYP_RS17895 (AYP_003563) pilQ 3661677..3663842 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  AYP_RS17900 (AYP_003564) pilP 3663910..3664437 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AYP_RS17905 (AYP_003565) pilO 3664448..3665188 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  AYP_RS17910 (AYP_003566) pilN 3665185..3665826 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  AYP_RS17915 (AYP_003567) pilM 3665826..3666884 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AYP_RS17920 (AYP_003568) ponA 3667047..3669602 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=252356 AYP_RS17905 WP_000076101.1 3664448..3665188(-) (pilO) [Acinetobacter baumannii strain AYP-A2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=252356 AYP_RS17905 WP_000076101.1 3664448..3665188(-) (pilO) [Acinetobacter baumannii strain AYP-A2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment