Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CG477_RS15410 Genome accession   NZ_CP024113
Coordinates   2948204..2948662 (+) Length   152 a.a.
NCBI ID   WP_087095284.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2943204..2953662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG477_RS15395 (CG477_015380) - 2943854..2944072 (+) 219 WP_012095151.1 hypothetical protein -
  CG477_RS15400 (CG477_015385) - 2944267..2946375 (-) 2109 WP_012095152.1 RNA degradosome polyphosphate kinase -
  CG477_RS15405 (CG477_015390) - 2946484..2948022 (-) 1539 WP_012095153.1 Ppx/GppA family phosphatase -
  CG477_RS15410 (CG477_015395) kre 2948204..2948662 (+) 459 WP_087095284.1 YkyB family protein Regulator
  CG477_RS15415 (CG477_015400) - 2948685..2949341 (-) 657 WP_087095285.1 YkyA family protein -
  CG477_RS15420 (CG477_015405) - 2949358..2950182 (-) 825 WP_087095286.1 peptidoglycan-N-acetylglucosamine deacetylase -
  CG477_RS15425 (CG477_015410) - 2950578..2951234 (-) 657 WP_012095157.1 GGDEF domain-containing protein -
  CG477_RS15430 (CG477_015415) - 2951397..2951630 (+) 234 WP_012095158.1 phage holin -
  CG477_RS15435 (CG477_015420) - 2951658..2952173 (-) 516 WP_012095159.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17624.34 Da        Isoelectric Point: 10.8395

>NTDB_id=252162 CG477_RS15410 WP_087095284.1 2948204..2948662(+) (kre) [Bacillus cytotoxicus strain CH_3]
MKQSHPQSHSPKQYSVNQLAQSIFVVNRHAKAATNPKYLYWLKKVALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKADFRTLPHLGALESSYRNPKTTLSLTTAKKTLQNFIGPEALTQEKKLSEAIPWYRRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=252162 CG477_RS15410 WP_087095284.1 2948204..2948662(+) (kre) [Bacillus cytotoxicus strain CH_3]
ATGAAACAATCCCACCCTCAATCTCATTCACCAAAACAATATTCTGTTAATCAATTAGCTCAATCTATTTTTGTTGTAAA
TCGTCATGCAAAGGCAGCTACAAATCCTAAATATTTATATTGGTTAAAAAAAGTTGCTTTAGAGCGACTAATTGCTGAAA
AAAAGGCGATTAAAGAAGGTCTACATTTTTCTCGAAATCCACGCTTCAGTCAACAACAGTCTGACGTCTTGATCCGTCTA
GGTGATTACTTTTTCCATATCCCTCCCACAAAAGCTGATTTTCGTACTCTCCCACATCTTGGTGCTCTTGAATCTTCCTA
TCGTAATCCCAAAACTACCCTTTCTTTAACAACAGCAAAGAAGACTCTTCAAAATTTCATCGGTCCTGAAGCCTTAACAC
AAGAAAAAAAATTGAGCGAAGCTATTCCGTGGTATCGACGTACGTACACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment