Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DEH83_RS08645 Genome accession   NZ_CP029207
Coordinates   1708790..1710778 (+) Length   662 a.a.
NCBI ID   WP_039677157.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703790..1715778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS08635 (DEH83_08670) - 1705678..1706418 (-) 741 WP_003032251.1 amino acid ABC transporter ATP-binding protein -
  DEH83_RS08640 (DEH83_08675) - 1706418..1708595 (-) 2178 WP_187327718.1 ABC transporter substrate-binding protein/permease -
  DEH83_RS08645 (DEH83_08680) uvrB 1708790..1710778 (+) 1989 WP_039677157.1 excinuclease ABC subunit UvrB Machinery gene
  DEH83_RS08650 (DEH83_08685) - 1710801..1711298 (+) 498 WP_247927204.1 GNAT family N-acetyltransferase -
  DEH83_RS08655 (DEH83_08690) - 1711334..1711885 (+) 552 WP_255776605.1 DUF1697 domain-containing protein -
  DEH83_RS08660 (DEH83_08695) hemW 1712088..1713218 (+) 1131 WP_255776606.1 radical SAM family heme chaperone HemW -
  DEH83_RS08665 (DEH83_08700) - 1713222..1713965 (+) 744 WP_255776607.1 acyl-[acyl-carrier-protein] thioesterase -
  DEH83_RS08670 (DEH83_08705) - 1713949..1714575 (+) 627 WP_003030635.1 NUDIX hydrolase -
  DEH83_RS08675 (DEH83_08710) - 1714669..1715442 (+) 774 WP_255776608.1 TIGR01457 family HAD-type hydrolase -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75672.78 Da        Isoelectric Point: 4.5354

>NTDB_id=252160 DEH83_RS08645 WP_039677157.1 1708790..1710778(+) (uvrB) [Streptococcus constellatus strain TCV107]
MINRITDNKFKLISKYEPSGDQPQAIEQLADNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGLEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFMTNDENMEIAIAKIQAELEQQLAIFEKEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEREQTDTVIEQIIRPTGLLDPAVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
VTDSMQKAMDETARRRQIQMAYNEEHGIVPQTIQKEIRDLISVTKSVLPDKEEVVEIESLNKQERKDMIKKLEGQMQEAA
GLLDFELAAQIRDMILEIKAMD

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=252160 DEH83_RS08645 WP_039677157.1 1708790..1710778(+) (uvrB) [Streptococcus constellatus strain TCV107]
ATGATAAACAGAATTACAGACAATAAATTTAAATTGATCTCCAAGTATGAGCCTTCAGGCGATCAACCACAAGCCATTGA
GCAATTAGCGGATAATATTGAAGGCGGTGAAAAAGCTCAAATTCTCATGGGAGCGACAGGAACAGGGAAGACTTATACTA
TGAGTCAGGTTATTCAAAAGGTCAATAAACCGACCTTAGTCATCGCTCATAATAAAACTCTGGCTGGTCAGCTCTATGGC
GAATTTAAGGAGTTTTTTCCTGACAATGCGGTCGAATACTTCGTGTCTTACTATGACTATTACCAACCGGAGGCTTATGT
GCCTTCCAGTGATACTTATATTGAAAAGGATAGCTCGGTCAATGATGAGATTGATAAACTTCGTCACTCAGCAACCTCTG
CTCTCTTGGAGCGCAACGATGTGATTGTTGTGGCGTCAGTCAGCTGCATTTATGGTCTGGGATCTCCTAAGGAATACTCC
GATAGCGTGGTCAGTTTGCGTCCTGGTCTAGAAATTTCCCGAGATAAGCTACTCAATGATCTGGTAGATATCCAGTTTGA
GCGTAATGATATTGATTTTCAGCGGGGGAAATTCCGGGTGCGTGGTGATGTAGTAGAAATTTTTCCGGCTTCTCGTGATG
AGCATGCCTTTCGAGTAGAATTTTTTGGTGATGAAATTGACCGTATTCGAGAAGTAGAAGCGTTGACAGGACAAGTTTTG
GGTGAAGTGGATCATTTAGCAATTTTCCCAGCTACTCACTTTATGACAAATGACGAAAATATGGAGATTGCCATTGCCAA
GATTCAGGCCGAGCTGGAGCAACAGCTGGCTATCTTTGAAAAGGAAGGGAAGCTCTTGGAAGCCCAACGATTGAAACAGC
GTACGGAGTATGATATTGAGATGCTCCGTGAGATGGGCTATACCAACGGTGTTGAGAACTATTCTCGTCACATGGATGGG
CGCAGCGAAGGTGAGCCACCTTATACCTTGCTTGATTTCTTCCCAGATGATTTTCTCATCATGATTGATGAAAGTCATAT
GACGATGGGGCAGATTAAAGGGATGTACAATGGTGACCGCTCGCGGAAGGAAATGCTGGTCAATTATGGTTTCCGCCTGC
CGTCTGCCTTGGACAATCGTCCGCTGCGTCGGGAGGAGTTTGAAAGTCATGTTCATCAGATTGTCTATGTATCTGCGACA
CCGGGTGACTATGAGCGAGAACAAACGGATACAGTAATTGAGCAAATTATTCGACCAACTGGGCTTCTGGATCCAGCAGT
CGAAGTGCGTCCGACTATGGGACAAATAGATGATCTTTTAGGTGAAATTAATGCGCGTGTTGAAAAGAATGAGCGAACGT
TTATCACAACGTTGACTAAAAAGATGGCAGAAGATTTGACAGATTACTTTAAAGAAATGGGAGTTAAAGTCAAGTACATG
CACTCGGATATCAAGACATTGGAGCGGACTGAGATTATCCGTGACTTGCGCCTGGGTGTCTTTGATGTCCTGGTCGGGAT
CAATCTGCTGCGCGAGGGAATTGATGTACCAGAGGTCAGTCTGGTTGCTATCCTTGATGCAGACAAAGAAGGTTTCTTAC
GAAATGAGCGTGGTTTGATCCAAACCATTGGTCGGGCTGCCCGCAACAGTGAGGGTCATGTCATCATGTATGCTGACACG
GTGACTGACTCTATGCAGAAGGCTATGGACGAGACCGCTCGCCGCCGTCAAATTCAGATGGCTTATAATGAAGAACATGG
TATTGTACCGCAAACAATCCAGAAAGAAATTCGTGACCTGATCAGTGTAACCAAATCTGTCCTGCCAGACAAAGAAGAAG
TCGTTGAAATTGAAAGTCTTAACAAACAGGAGCGTAAAGATATGATTAAGAAACTAGAGGGACAAATGCAAGAAGCTGCA
GGACTTCTCGACTTCGAACTGGCTGCACAGATTCGCGATATGATTTTAGAGATAAAGGCGATGGACTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(626-660)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

93.202

100

0.932
  uvrB Streptococcus pneumoniae D39

93.202

100

0.932
  uvrB Streptococcus pneumoniae TIGR4

93.051

100

0.931

Multiple sequence alignment