Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DEH83_RS07220 Genome accession   NZ_CP029207
Coordinates   1407588..1408184 (+) Length   198 a.a.
NCBI ID   WP_039677306.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1402588..1413184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS07190 (DEH83_07195) - 1403277..1403456 (+) 180 WP_255776485.1 hypothetical protein -
  DEH83_RS07195 (DEH83_07200) - 1403536..1403811 (+) 276 WP_255776486.1 terminase small subunit -
  DEH83_RS07200 (DEH83_07205) - 1403877..1404242 (+) 366 WP_006268450.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DEH83_RS07205 (DEH83_07210) HI0659 1404232..1404525 (+) 294 WP_150890982.1 helix-turn-helix domain-containing protein Machinery gene
  DEH83_RS07210 (DEH83_07215) - 1404617..1405162 (+) 546 WP_255776487.1 hypothetical protein -
  DEH83_RS07215 (DEH83_07220) pbp2b 1405511..1407577 (+) 2067 WP_255776488.1 penicillin-binding protein PBP2B -
  DEH83_RS07220 (DEH83_07225) recR 1407588..1408184 (+) 597 WP_039677306.1 recombination mediator RecR Machinery gene
  DEH83_RS07225 (DEH83_07230) - 1408315..1409361 (+) 1047 WP_049481403.1 D-alanine--D-alanine ligase -
  DEH83_RS07230 (DEH83_07235) murF 1409624..1410994 (+) 1371 WP_255776489.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DEH83_RS07235 (DEH83_07240) - 1410984..1411521 (+) 538 Protein_1378 DUF1697 domain-containing protein -
  DEH83_RS07240 (DEH83_07245) - 1411528..1412232 (+) 705 WP_070669262.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21561.61 Da        Isoelectric Point: 4.3080

>NTDB_id=252149 DEH83_RS07220 WP_039677306.1 1407588..1408184(+) (recR) [Streptococcus constellatus strain TCV107]
MLYPTPIAKLIESFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELAYCSICGNLTDDDPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVAEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=252149 DEH83_RS07220 WP_039677306.1 1407588..1408184(+) (recR) [Streptococcus constellatus strain TCV107]
ATGCTTTATCCAACACCGATTGCGAAATTAATTGAAAGTTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACACG
CTTGGCTTTTTATACGATTGGCATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTACTTGCAGCCAAACGTGAGC
TAGCCTATTGCTCTATTTGTGGCAATTTAACGGATGATGATCCTTGTGCTATCTGTACCGATGAGACCCGTGATCAGTCT
ACTATTTTGGTTGTAGAAGATAGTCGAGATGTATCTGCTATGGAAAATATCCAAGAATACCATGGTTTATACCATGTTTT
GCAAGGATTGATTTCTCCTATGAATGGTGTCGGACCTGATGACATCAATCTGAAAAGTTTGATTACACGGTTAATGGATA
GTGAGGTGGCTGAAGTGATTGTAGCGACCAATGCTACAGCAGATGGAGAAGCAACTTCCATGTATATCTCGCGGGTGTTA
AAGCCAGCTGGTATCAAAGTGACGCGACTAGCCCGTGGATTAGCAGTTGGATCTGATATTGAATATGCAGATGAAGTGAC
TTTGCTTCGAGCTATTGAGAATCGTACGGAGTTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

90.404

100

0.904
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485