Detailed information NTG0025208

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HCH_RS26635
• Genome accession: NC_007645
• Coordinates: 6055503..6056861 (+)
• Length: 452 a.a.
• NCBI ID: WP_011399633.1
• Uniprot ID: Q2S9U9
• Organism: Hahella chejuensis KCTC 2396
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6050503..6061861

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCH_RS26620 (HCH_05922)	-	6051182..6052036 (+)	855	WP_202945278.1	outer membrane protein assembly factor BamD	-
HCH_RS26625 (HCH_05923)	-	6052104..6053732 (-)	1629	WP_041598954.1	NAD+ synthase	-
HCH_RS26630 (HCH_05924)	-	6053902..6055491 (+)	1590	WP_041598955.1	sensor histidine kinase	-
HCH_RS26635 (HCH_05925)	pilR	6055503..6056861 (+)	1359	WP_011399633.1	sigma-54-dependent transcriptional regulator	Regulator
HCH_RS26640 (HCH_10022)	-	6056993..6057526 (+)	534	WP_011399634.1	GspH/FimT family pseudopilin	-
HCH_RS26645 (HCH_05926)	-	6057573..6058007 (-)	435	WP_011399635.1	type IV pilin protein	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 50393.70 Da
• Isoelectric Point: 5.1213

>NTDB_id=25208 HCH_RS26635 WP_011399633.1 6055503..6056861(+) (pilR) [Hahella chejuensis KCTC 2396]
MIKKVLIVDDEPDIRALLEITLSRMQIETRAAENITQAKQLLSEESFSLVLTDMNMPDGNGIDLVAHIQKQSSNTPVAVI
TAYGSIDTAISALKAGAFDFVSKPVDLARLRELVNSALKLPKNDAPKATPQVTQLLGESSTMDKLRGQIRKLARSQAPIY
ISGESGSGKEMVAKSIHEQGPRSEGPFVPVNCGAIPSELMESEFFGHKKGAFTGAVENKVGLFQAANGGTLFLDEVADLP
LTMQVKLLRAIQEKAVRPVGEQKEIPIDVRILSATHKDLHSEVDEGRFRQDLFYRINVIELRVPSLRQRKEDIPLLANHF
LKQLADECEIPNASISKSAMQKLESYYFPGNVRELENIMERAFTLCEDDVINEEDIHLPKTDTEGLTSDSMELDVPEFDE
NKVNLEHFLENIEKQAIEKALEETRWNKTAAAKKLGISFRALRYRLKKLGME

Nucleotide

• Length: 1359 bp

>NTDB_id=25208 HCH_RS26635 WP_011399633.1 6055503..6056861(+) (pilR) [Hahella chejuensis KCTC 2396]
ATGATAAAAAAAGTACTCATTGTCGACGACGAACCCGATATCCGCGCATTACTGGAAATCACTTTAAGCCGCATGCAGAT
AGAAACACGGGCGGCGGAAAATATCACGCAGGCCAAACAACTATTAAGCGAAGAGAGCTTTAGCCTTGTACTGACTGACA
TGAATATGCCGGACGGCAATGGCATCGACCTTGTCGCCCATATCCAGAAGCAATCATCCAATACGCCTGTAGCGGTCATT
ACAGCTTATGGCAGTATAGACACGGCGATTTCTGCGCTTAAAGCCGGCGCCTTCGACTTTGTCTCCAAGCCTGTAGATCT
TGCGCGCCTGCGTGAGCTGGTTAACAGCGCATTGAAACTGCCAAAAAATGACGCCCCCAAAGCAACCCCTCAAGTAACCC
AATTGCTCGGCGAATCATCCACGATGGATAAGCTACGCGGGCAAATCAGAAAACTCGCGCGCAGCCAGGCGCCTATCTAT
ATCAGCGGCGAGTCAGGCAGCGGCAAAGAAATGGTCGCCAAATCGATCCATGAACAGGGGCCTCGCAGCGAAGGGCCCTT
TGTGCCAGTCAACTGTGGCGCTATACCCAGCGAGCTGATGGAGAGCGAATTCTTTGGCCACAAGAAAGGTGCGTTTACCG
GCGCTGTTGAAAATAAAGTGGGGTTATTTCAAGCTGCGAATGGCGGGACCCTGTTTCTCGACGAAGTCGCCGATTTACCG
CTGACGATGCAGGTTAAACTTCTCCGCGCCATTCAGGAAAAAGCAGTTCGTCCAGTCGGTGAACAGAAGGAGATCCCCAT
TGATGTACGCATACTCTCCGCCACCCATAAAGATTTGCACAGCGAAGTAGATGAAGGCCGGTTCCGTCAGGACCTTTTTT
ATCGAATAAATGTCATCGAGCTGAGAGTCCCAAGCTTACGCCAACGCAAAGAAGACATCCCCCTTCTCGCTAATCATTTC
CTTAAACAATTAGCGGACGAATGTGAGATCCCCAACGCATCAATTAGCAAGTCAGCGATGCAGAAACTGGAGTCTTATTA
TTTTCCAGGCAACGTTCGCGAACTGGAAAATATTATGGAGCGCGCTTTTACCCTGTGCGAAGACGATGTCATTAACGAAG
AGGACATCCATCTGCCTAAAACAGATACCGAGGGTTTAACATCCGACTCAATGGAGCTGGATGTTCCTGAGTTCGACGAG
AACAAAGTTAACCTTGAACACTTTCTCGAAAACATCGAAAAGCAAGCTATTGAGAAAGCCCTTGAAGAAACACGATGGAA
TAAAACGGCTGCCGCCAAGAAGCTGGGCATCAGCTTTCGAGCCCTTCGCTACCGCCTGAAAAAGCTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (408-449)

• Response regulator receiver domain (Response_reg) (5-114)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

3D structure

• AlphaFold DB: Q2S9U9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.225	100	0.664
pilR	Acinetobacter baumannii strain A118	50.98	100	0.518
luxO	Vibrio cholerae strain A1552	37.22	98.673	0.367