Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DEF50_RS09815 Genome accession   NZ_CP029180
Coordinates   1831818..1832555 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain H9Ecoli     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1826818..1837555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEF50_RS09800 (DEF50_09800) clpC 1827272..1829845 (-) 2574 WP_072645534.1 ATP-dependent chaperone ClpB Regulator
  DEF50_RS09805 (DEF50_09805) yfiH 1829975..1830706 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  DEF50_RS09810 (DEF50_09810) rluD 1830703..1831683 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DEF50_RS09815 (DEF50_09815) comL 1831818..1832555 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  DEF50_RS09825 (DEF50_09825) raiA 1832826..1833167 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DEF50_RS09830 (DEF50_09830) pheL 1833271..1833318 (+) 48 WP_010723158.1 phe operon leader peptide -
  DEF50_RS09835 (DEF50_09835) pheA 1833417..1834577 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  DEF50_RS09840 (DEF50_09840) tyrA 1834620..1835741 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DEF50_RS09845 (DEF50_09845) aroF 1835752..1836822 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  DEF50_RS09850 (DEF50_09850) yfiL 1837032..1837397 (+) 366 WP_072645532.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=252005 DEF50_RS09815 WP_000197686.1 1831818..1832555(+) (comL) [Escherichia coli strain H9Ecoli]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=252005 DEF50_RS09815 WP_000197686.1 1831818..1832555(+) (comL) [Escherichia coli strain H9Ecoli]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment