Detailed information NTG0251917

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CG482_RS10250
• Genome accession: NZ_CP024101
• Coordinates: 1981246..1981959 (+)
• Length: 237 a.a.
• NCBI ID: WP_048722965.1
• Uniprot ID: A0AAX2CGP3
• Organism: Bacillus cytotoxicus strain CH_25
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1976246..1986959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG482_RS23785	-	1976342..1976476 (+)	135	WP_235436365.1	NmrA family NAD(P)-binding protein	-
CG482_RS23790	-	1976464..1976847 (+)	384	WP_235436366.1	NAD(P)H-binding protein	-
CG482_RS10225 (CG482_010135)	-	1977246..1978058 (+)	813	WP_012094306.1	MerR family transcriptional regulator	-
CG482_RS10230 (CG482_010140)	-	1978403..1979320 (+)	918	WP_048723104.1	ABC transporter ATP-binding protein	-
CG482_RS10235 (CG482_010145)	-	1979317..1980069 (+)	753	WP_048722961.1	ABC transporter permease	-
CG482_RS10240 (CG482_010150)	-	1980082..1980813 (+)	732	WP_048722963.1	ABC transporter permease	-
CG482_RS23795	-	1980942..1981145 (+)	204	WP_235436391.1	DUF1093 domain-containing protein	-
CG482_RS10250 (CG482_010160)	scnR	1981246..1981959 (+)	714	WP_048722965.1	response regulator transcription factor	Regulator
CG482_RS10255 (CG482_010165)	-	1981960..1983366 (+)	1407	WP_048722967.1	sensor histidine kinase	-
CG482_RS10260 (CG482_010170)	-	1983723..1984061 (-)	339	WP_048722970.1	DUF4064 domain-containing protein	-
CG482_RS10265 (CG482_010175)	-	1984078..1984524 (-)	447	Protein_1924	DUF4352 domain-containing protein	-
CG482_RS22990	-	1984511..1984819 (+)	309	WP_140388422.1	hypothetical protein	-
CG482_RS10270 (CG482_010180)	abrB	1985244..1985522 (+)	279	WP_012094321.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Regulator
CG482_RS10275 (CG482_010185)	-	1985741..1986535 (+)	795	WP_048722974.1	LysM peptidoglycan-binding domain-containing protein	-
CG482_RS10280 (CG482_010190)	-	1986743..1986940 (+)	198	WP_048722977.1	hypothetical protein	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 26942.45 Da
• Isoelectric Point: 6.2727

>NTDB_id=251917 CG482_RS10250 WP_048722965.1 1981246..1981959(+) (scnR) [Bacillus cytotoxicus strain CH_25]
MGNLKDKKILIVDDEPEIRIMIERFLRKEGFFRIFSAADCTSALSLCRVDRPDIVILDVMLPDGDGFSLLSSIRQFSNMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLIAVLKRVYSSPVVERLSIFQLGKQTVDLESAVVYRGETEMPL
TAKEHAILVKLYENRGRIVTSDAICQAVWGDDSYGYENTLMVHIRRVREKIEPDPSKPIYLLTVRGLGYKLLLKETH

Nucleotide

• Length: 714 bp

>NTDB_id=251917 CG482_RS10250 WP_048722965.1 1981246..1981959(+) (scnR) [Bacillus cytotoxicus strain CH_25]
ATGGGAAATTTAAAAGATAAAAAAATCTTAATTGTCGATGATGAACCAGAAATAAGAATCATGATTGAAAGGTTCTTAAG
AAAAGAGGGATTTTTCCGGATTTTTAGTGCTGCTGATTGTACGTCAGCTCTATCGCTTTGTCGTGTAGATCGGCCAGATA
TCGTTATTCTTGATGTTATGCTACCTGATGGTGACGGCTTTTCACTTTTATCTTCGATTAGGCAGTTCTCAAATATGCCG
GTTCTGTTTCTATCTGCACGAGGAGAAGATGAGGACCGGTTACTTGGATTAGGTTTAGGGGCAGATGATTATATTGTAAA
GCCGTTCTTACCACGTGAACTCGTATTACGTCTTATCGCTGTTTTAAAACGAGTCTATTCTTCTCCTGTTGTAGAGCGTC
TATCAATCTTTCAATTAGGGAAACAAACTGTGGACTTAGAAAGCGCTGTTGTGTATAGGGGTGAAACAGAAATGCCCTTA
ACAGCAAAAGAACATGCTATTCTTGTAAAGCTATATGAGAATCGAGGTCGAATTGTGACAAGCGACGCTATATGTCAAGC
AGTTTGGGGAGATGATAGCTACGGTTACGAAAATACATTAATGGTCCATATTAGGCGAGTACGTGAAAAAATTGAACCAG
ATCCCTCCAAACCGATTTATCTTCTTACTGTGAGGGGACTAGGGTATAAATTGCTTTTGAAGGAGACGCATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-231)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	49.782	96.624	0.481
vicR	Streptococcus mutans UA159	40.611	96.624	0.392
micA	Streptococcus pneumoniae Cp1015	40.351	96.203	0.388