Detailed information NTG0251282

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CLA18_RS28065
• Genome accession: NZ_CP024025
• Coordinates: 6206145..6207479 (+)
• Length: 444 a.a.
• NCBI ID: WP_210671181.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain DTU9.1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6201145..6212479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLA18_RS28045 (CLA18_27955)	pgeF	6202501..6203226 (-)	726	WP_265577526.1	peptidoglycan editing factor PgeF	-
CLA18_RS28050 (CLA18_27960)	rluD	6203223..6204185 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
CLA18_RS28055 (CLA18_27965)	-	6204336..6205361 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
CLA18_RS28060 (CLA18_27970)	-	6205486..6205719 (+)	234	WP_015637081.1	PP0621 family protein	-
CLA18_RS28065 (CLA18_27975)	pilR	6206145..6207479 (+)	1335	WP_210671181.1	sigma-54 dependent transcriptional regulator	Regulator
CLA18_RS28070 (CLA18_27980)	thiO	6207476..6208576 (-)	1101	WP_161466729.1	glycine oxidase ThiO	-
CLA18_RS28075 (CLA18_27985)	-	6208630..6209031 (-)	402	WP_015637084.1	type IV pilin protein	-
CLA18_RS28080 (CLA18_27990)	-	6209047..6212109 (-)	3063	WP_265577527.1	pilus assembly protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49275.54 Da
• Isoelectric Point: 8.8656

>NTDB_id=251282 CLA18_RS28065 WP_210671181.1 6206145..6207479(+) (pilR) [Pseudomonas protegens strain DTU9.1]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATEDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKSVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVKLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=251282 CLA18_RS28065 WP_210671181.1 6206145..6207479(+) (pilR) [Pseudomonas protegens strain DTU9.1]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGAGGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGTCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAATCCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCAAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.431	99.775	0.633
pilR	Acinetobacter baumannii strain A118	45.316	100	0.468
luxO	Vibrio cholerae strain A1552	37.327	97.748	0.365